On 01/25/2017 04:17 PM, Andreas Tille wrote: > Hi, > > I'm trying to upgrade the python-pysam package. When I build the > current status in Git[1] the package builds fine. However I tried to > build python-pbcore that Build-Depends python-pysam and the build time > tests of python-pbcore failed with > > ERROR: Failure: ImportError (libchtslib.so: cannot open shared object file: > No such file or directory) > > When installing python-pysam 0.10.0+ds-1 I get > > $ ls -l /usr/lib/python2.7/dist-packages/pysam/libchtslib.*.so > -rw-r--r-- 1 root root 103864 Jan 24 04:13 > /usr/lib/python2.7/dist-packages/pysam/libchtslib.x86_64-linux-gnu.so Certainly because at build time it compiles against libchtslib.so provided by a -dev package and keeps this reference instead of using "real" library file libchtslib.x86_64-linux-gnu.so
Olivier > $ ldd /usr/lib/python2.7/dist-packages/pysam/*.so | grep -e ^/ -e "not found" > /usr/lib/python2.7/dist-packages/pysam/libcalignedsegment.x86_64-linux-gnu.so: > libchtslib.so => not found > /usr/lib/python2.7/dist-packages/pysam/libcalignmentfile.x86_64-linux-gnu.so: > libchtslib.so => not found > /usr/lib/python2.7/dist-packages/pysam/libcbcf.x86_64-linux-gnu.so: > libchtslib.so => not found > /usr/lib/python2.7/dist-packages/pysam/libcbgzf.x86_64-linux-gnu.so: > libchtslib.so => not found > /usr/lib/python2.7/dist-packages/pysam/libcfaidx.x86_64-linux-gnu.so: > libchtslib.so => not found > /usr/lib/python2.7/dist-packages/pysam/libchtslib.x86_64-linux-gnu.so: > /usr/lib/python2.7/dist-packages/pysam/libcsamfile.x86_64-linux-gnu.so: > libchtslib.so => not found > /usr/lib/python2.7/dist-packages/pysam/libctabixproxies.x86_64-linux-gnu.so: > libchtslib.so => not found > /usr/lib/python2.7/dist-packages/pysam/libctabix.x86_64-linux-gnu.so: > libchtslib.so => not found > /usr/lib/python2.7/dist-packages/pysam/libcutils.x86_64-linux-gnu.so: > libchtslib.so => not found > /usr/lib/python2.7/dist-packages/pysam/libcvcf.x86_64-linux-gnu.so: > libchtslib.so => not found > > > I'm wondering why libchtslib is not found by all those dynamic libs. > > Any help is welcome > > Andreas. > > > [1] https://anonscm.debian.org/git/debian-med/python-pysam.git > -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
