Le Wed, Nov 20, 2013 at 10:24:29PM +0100, Andreas Tille a écrit : > > without having checked out the repository and diving into it: Can you > post a diff of the two build logs?
Hi Andreas, here it is (attached). Could the problem be a side effect of the test suite ? Cheers, -- Charles
--- with-.git 2013-11-21 09:32:14.244499056 +0900 +++ without-.git 2013-11-21 09:34:12.908497923 +0900 @@ -150,15 +150,6 @@ dh_auto_test make -j1 test make[2]: Entering directory `/tmp/htslib' -echo '#define HTS_VERSION "debian/0.2.0_rc3-1-38-g9469458"' > version.h -gcc -g -Wall -O2 -I. -DSAMTOOLS=1 -c -o hts.o hts.c -ar -rc libhts.a kfunc.o knetfile.o kstring.o bgzf.o faidx.o hfile.o hfile_net.o hts.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/md5.o cram/open_trace_file.o cram/pooled_alloc.o cram/sam_header.o cram/string_alloc.o cram/thread_pool.o cram/vlen.o cram/zfio.o -ranlib libhts.a -gcc -pthread -o test/fieldarith test/fieldarith.o libhts.a -lz -gcc -o test/hfile test/hfile.o libhts.a -lz -gcc -pthread -o test/test_view test/test_view.o libhts.a -lz -gcc -pthread -o test/test-vcf-api test/test-vcf-api.o libhts.a -lz -gcc -pthread -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -lz test/fieldarith test/fieldarith.sam test/hfile cd test && ./test_view.pl @@ -456,11 +447,11 @@ Failures 0 cd test && ./test.pl test_vcf_api: - /tmp/htslib/test/test-vcf-api /tmp/Vvj_N60T4W/test-vcf-api.bcf + /tmp/htslib/test/test-vcf-api /tmp/cUKPv4vctM/test-vcf-api.bcf .. ok test_vcf_sweep: - /tmp/htslib/test/test-vcf-sweep /tmp/Vvj_N60T4W/test-vcf-api.bcf + /tmp/htslib/test/test-vcf-sweep /tmp/cUKPv4vctM/test-vcf-api.bcf .. ok @@ -495,10 +486,6 @@ make -j1 install DESTDIR=/tmp/htslib/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr PACKAGE_VERSION=0.2.0\~rc4-1 make[2]: Entering directory `/tmp/htslib' mkdir -p /tmp/htslib/debian/tmp/usr/include/htslib /tmp/htslib/debian/tmp/usr/lib /tmp/htslib/debian/tmp/usr/share/man/man5 -echo '#define HTS_VERSION "0.2.0~rc4-1"' > version.h -gcc -g -Wall -O2 -I. -DSAMTOOLS=1 -fpic -c -o hts.pico hts.c -gcc -shared -Wl,-soname,libhts.so.0 -o libhts.so kfunc.pico knetfile.pico kstring.pico bgzf.pico faidx.pico hfile.pico hfile_net.pico hts.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/files.pico cram/mFILE.pico cram/md5.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/sam_header.pico cram/string_alloc.pico cram/thread_pool.pico cram/vlen.pico cram/zfio.pico -lz -ln -sf libhts.so libhts.so.0 install -p -m 644 libhts.so /tmp/htslib/debian/tmp/usr/lib/libhts.so.0.2.0~rc4-1 ln -sf libhts.so.0.2.0~rc4-1 /tmp/htslib/debian/tmp/usr/lib/libhts.so ln -sf libhts.so.0.2.0~rc4-1 /tmp/htslib/debian/tmp/usr/lib/libhts.so.0 @@ -660,7 +647,7 @@ dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libhts0/DEBIAN/symbols doesn't match completely debian/libhts0.symbols --- debian/libhts0.symbols (libhts0_0.2.0~rc4-1_amd64) -+++ dpkg-gensymbolskXM3kh 2013-11-21 09:32:00.312499189 +0900 ++++ dpkg-gensymbols4DQT53 2013-11-21 09:34:08.056497969 +0900 @@ -230,6 +230,7 @@ cram_huffman_encode_int0@Base 0.2.0~rc3 cram_huffman_encode_int@Base 0.2.0~rc3 @@ -675,12 +662,12 @@ rm -f debian/htslib-test/DEBIAN/shlibs dh_shlibdeps dpkg-shlibdeps -Tdebian/libhts0.substvars debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0\~rc4-1 -dpkg-shlibdeps: warning: symbol exp used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries -dpkg-shlibdeps: warning: symbol pthread_join used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries -dpkg-shlibdeps: warning: symbol pthread_kill used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_create used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries +dpkg-shlibdeps: warning: symbol exp used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries dpkg-shlibdeps: warning: symbol lgamma used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries +dpkg-shlibdeps: warning: symbol pthread_kill used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries dpkg-shlibdeps: warning: symbol log used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries +dpkg-shlibdeps: warning: symbol pthread_join used by debian/libhts0/usr/lib/x86_64-linux-gnu/libhts.so.0.2.0~rc4-1 found in none of the libraries install -o 0 -g 0 -d debian/libhts-dev/DEBIAN install -o 0 -g 0 -d debian/htslib-test/DEBIAN dh_installdeb