Le Tue, Sep 23, 2014 at 02:44:16PM +0200, Jakub Wilk a écrit :
>
> "samtools stats" displays help, but only if stdin is a terminal. If
> it is not, it'll read data from it:
>
> if ( !bam_fname )
> {
> if ( isatty(STDIN_FILENO) )
> error(NULL);
> bam_fname = "-";
> }
Brilliant, many thanks !
The issue was then quickly solved upstream.
https://github.com/samtools/samtools/issues/300
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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