Good evening everybody,
I am probably missing something obvious, but I have simple problem with the
samtools package, where the regression tests depend on the "tabix" package for
the "bgzip" command, and fail on ci.debian.net despite my attempt to set the
dependency properly...
$ curl
http://anonscm.debian.org/cgit/debian-med/samtools.git/plain/debian/tests/control
Tests: samtools-test
Depends: @, tabix
Restrictions: allow-stderr
$ curl --silent --compressed
http://ci.debian.net/data/packages/unstable/amd64/s/samtools/20150607_002702.autopkgtest.log.gz
| tail -n15
Setting up samtools-test (1.1-1) ...
Setting up adt-satdep (0) ...
Processing triggers for libc-bin (2.19-18) ...
adt-run [00:27:23]: test samtools-test: [-----------------------
The command failed [32512]: cat /tmp/YHnFtIRjxI/bgzip.dat | bgzip -ci
-I/tmp/YHnFtIRjxI/bgzip.dat.gz.gzi > /tmp/YHnFtIRjxI/bgzip.dat.gz
out:
err:/bin/bash: bgzip: command not found
at ./test.pl line 67.
main::error("The command failed [32512]: cat /tmp/YHnFtIRjxI/bgzip.dat
| b"..., "out:\x{a}", "err:/bin/bash: bgzip: command not found\x{a}\x{a}")
called at ./test.pl line 138
main::cmd("cat /tmp/YHnFtIRjxI/bgzip.dat | bgzip -ci
-I/tmp/YHnFtIRjxI/b"...) called at ./test.pl line 300
main::test_bgzip(HASH(0x1951e78)) called at ./test.pl line 35
adt-run [00:27:24]: test samtools-test: -----------------------]
adt-run [00:27:24]: test samtools-test: - - - - - - - - - - results - - -
- - - - - - -
samtools-test FAIL non-zero exit status 127
Does anybody spot what I have been missing ?
Have a nice day
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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