Hi, >g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 >-std=c++11 -I/nonexistent/software/include -I../gzstream -I../dlib -D >>DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -Wl,-z,relro >sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerFilter.o >seerIO.o >seerChiFilter.o seerMain.o seerCmdLine.o seerContinuousAssoc.o >seerBinaryAssoc.o logitFunction.o linearFunction.o -lhdf5 -lgzstream -lz >-larmadillo >-lboost_program_options -llapack -lblas -Wl,-z,relro -o seer
>/usr/bin/ld: cannot find -lhdf5 >/usr/bin/ld: cannot find -lgzstream >/usr/bin/ld: cannot find -lboost_program_options >collect2: error: ld returned 1 exit status > >Any hint how to elegantly deal with this situation? using cmake :) if you don't want to, you can call pkg-config --libs "foo" if foo provides a pc file, or by finding the library location and call -l with -Ldirectorynonstandard if lib is stored in /lib/triplet/privatetool/libfoo.so you can link it with -L/lib/triplet/privatetool -lfoo but you need to have the required build-dependencies of the -dev packages installed. cheers, G.
