Hi Piotr,
thanks for your quick help!
On Tue, Jul 21, 2015 at 05:29:18PM +0200, Piotr Ożarowski wrote:
> [Piotr Ożarowski, 2015-07-21]
> > export PYBUILD_TEST_NOSE=1
>
> if tests are not installed, add also:
>
> export PYBUILD_TEST_ARGS={dir}/tests
While it looks a lot more elegant if I do
export PYBUILD_TEST_NOSE=1
export PYBUILD_TEST_ARGS={dir}/tests
...
override_dh_auto_test:
# Tests are stumbling upon missing ex1.bam file ...
ln -s pysam_data/ex1.bam tests
cd tests && make -C pysam_data
dh_auto_test
This ends in:
...
======================================================================
ERROR: testParsing (tabix_test.TestVCFFromVCF)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/home/andreas/debian-maintain/repack/python-pysam/pysam-0.8.3/tests/tabix_test.py",
line 806, in setUp
TestVCF.setUp(self)
File
"/home/andreas/debian-maintain/repack/python-pysam/pysam-0.8.3/tests/tabix_test.py",
line 664, in setUp
shutil.copyfile(self.filename, self.tmpfilename)
File "/usr/lib/python2.7/shutil.py", line 82, in copyfile
with open(src, 'rb') as fsrc:
IOError: [Errno 2] No such file or directory: 'tabix_data/example.vcf40'
----------------------------------------------------------------------
Ran 531 tests in 1.706s
FAILED (errors=468)
E: pybuild pybuild:256: test: plugin distutils failed with: exit code=1: cd
/home/andreas/debian-maintain/repack/python-pysam/pysam-0.8.3/.pybuild/pythonX.Y_2.7/build;
python2.7 -m nose --with-doctest {dir}/tests
dh_auto_test: pybuild --test -i python{version} -p 2.7 --dir . returned exit
code 13
tabix_data is a subdirectory of tests and seems to be ignored with the
method you proposed.
Thanks anyway
Andreas.
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