On Thu, 12 Dec 2019, Andreas Tille wrote:

That hint was helpful anyway and I get further now.  I think now the
problem is to convince scons to install in $(CURDIR)/debian/tmp which
seems to try rather /usr/share/pdb2pqr directly:

Looks like the debian/rules file is specifying /usr/share/pdb2pqr as PREFIX:


Arrghh, good if somebody else is proof-reading.  However, setting this
does not help:

mkdir -p /build/pdb2pqr-2.1.1+dfsg/debian/tmp/usr/share/pdb2pqr
scons \
       URL="http://localhost/pdb2pqr/"; \
scons: Reading SConscript files ...
not using opal
scons: done reading SConscript files.
scons: Building targets ...
CopySubAction("pdb2pqr.py", "pdb2pqr.py.in")
scons: *** [pdb2pqr.py] Can't write target file pdb2pqr.py
scons: building terminated because of errors.

I think you need to change the other open() call in that function to write in text mode also.


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