Hi, I need some help with a sphinx error for python-skbio:
On Tue, Aug 11, 2020 at 10:26:10AM +0200, Sebastiaan Couwenberg wrote: > On 8/11/20 9:41 AM, Andreas Tille wrote: > > On Tue, Aug 11, 2020 at 07:17:30AM +0200, Sebastiaan Couwenberg wrote: > >> A smiliar issue was reported for mapproxy in #966979, which was not an > >> issue in mapproxy but in sphinx, and fixed in sphinx (2.4.3-5). > >> > >> I have not tested the build of this package, but the dh_sphinxdoc issue > >> is mostl likely fixed with sphinx (2.4.3-5) as well. > > > > Thanks for the hint but I get: > > > > reading sources... [ 0%] generated/skbio.alignment.AlignmentStructure > > /build/python-skbio-0.5.6/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py:143: > > RuntimeWarning: The result contains negative eigenvalues. Please compare > > their magnitude with the magnitude of some of the largest positive > > eigenvalues. If the negative ones are smaller, it's probably safe to ignore > > them, but if they are large in magnitude, the results won't be useful. See > > the Notes section for more details. The smallest eigenvalue is > > -0.011492611219229537 and the largest is 16.021722090908206. > > warn( > > /build/python-skbio-0.5.6/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/_ordination_results.py:285: > > UserWarning: Tight layout not applied. The left and right margins cannot > > be made large enough to accommodate all axes decorations. > > fig.tight_layout() > > > > Extension error: > > Handler <function _process_docstring at 0x7f951324b1f0> for event > > 'autodoc-process-docstring' threw an exception (exception: module, class, > > method, function, traceback, frame, or code object was expected, got > > method_descriptor) > > make[1]: *** [debian/rules:20: override_dh_auto_build-indep] Error 2 > > That's not the dh_sphinxdoc error this issue was filed for. > > This failure is most likely caused by an extension not being compatible > with sphinx 3.2.0. > > sphinx was upgraded in unstable from 2.4.3-5 to 3.2.0-1 two days ago. Any idea how to fix this? Kind regards Andreas. -- http://fam-tille.de