Hi,
I think there are some remaining issues with numpy 1.24 migration on 32
bit architectures[1].
Here is one example:
_________ TestSequence.test_getitem_with_slice_has_positional_metadata _________
self = <skbio.sequence.tests.test_sequence.TestSequence
testMethod=test_getitem_with_slice_has_positional_metadata>
def test_getitem_with_slice_has_positional_metadata(self):
s = "0123456789abcdef"
length = len(s)
seq = Sequence(s, metadata={'id': 'id3', 'description': 'dsc3'},
positional_metadata={'quality': np.arange(length)})
eseq = Sequence("012", metadata={'id': 'id3', 'description': 'dsc3'},
positional_metadata={'quality': np.arange(3)})
self.assertEqual(seq[0:3], eseq)
self.assertEqual(seq[:3], eseq)
self.assertEqual(seq[:3:1], eseq)
eseq = Sequence("def", metadata={'id': 'id3', 'description': 'dsc3'},
positional_metadata={'quality': [13, 14, 15]})
> self.assertEqual(seq[-3:], eseq)
E AssertionError: Seque[128 chars]: int32>
E Stats:
E length: 3
E ----------------[14 chars]0 def != Seque[128 chars]: int64>
E Stats:
E length: 3
E ----------------[14 chars]0 def
skbio/sequence/tests/test_sequence.py:748: AssertionError
How can I ensure that in both cases the arrays have the same type (I think it
makes
no difference whether it is np.int32 or np.int64 as long as they are of same
type.
Kind regards
Andreas.
[1]
https://buildd.debian.org/status/package.php?p=python-skbio&suite=experimental
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