Your message dated Thu, 09 Jul 2020 16:04:50 +0000 with message-id <[email protected]> and subject line Bug#954590: fixed in python-bayespy 0.5.18-3 has caused the Debian Bug report #954590, regarding python-bayespy: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p "3.7 3.8" returned exit code 13 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 954590: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=954590 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: python-bayespy Version: 0.5.18-2 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20200321 ftbfs-bullseye Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > xvfb-run -a dh_auto_test > I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bayespy/build; > python3.7 -m nose -v > Test the creation of Bernoulli nodes. ... ok > Test mixture of Bernoulli ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bayespy/build/bayespy/inference/vmp/nodes/categorical.py:43: > FutureWarning: Using a non-tuple sequence for multidimensional indexing is > deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this > will be interpreted as an array index, `arr[np.array(seq)]`, which will > result either in an error or a different result. > u0[[np.arange(np.size(x)), np.ravel(x)]] = 1 > ok > Test the moments of Bernoulli nodes. ... ok > Test observation of Bernoulli node ... ok > Test random sampling in Bernoulli node ... ok > Test the creation of beta nodes. ... ok > Test the moments of beta nodes. ... ok > Test random sampling of beta nodes. ... ok > Test the creation of binomial nodes. ... ok > Test binomial mixture ... ok > Test the moments of binomial nodes. ... ok > Test observation of Bernoulli node ... ok > Test random sampling in Binomial node ... ok > Test constant categorical nodes ... ok > Check the Euclidean gradient of the categorical node ... ok > Test the creation of categorical nodes. ... ok > Test initialization of categorical nodes ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bayespy/build/bayespy/inference/vmp/nodes/categorical.py:43: > FutureWarning: Using a non-tuple sequence for multidimensional indexing is > deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this > will be interpreted as an array index, `arr[np.array(seq)]`, which will > result either in an error or a different result. > u0[[np.arange(np.size(x)), np.ravel(x)]] = 1 > ok > Test the moments of categorical nodes. ... ok > Test observed categorical nodes ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bayespy/build/bayespy/inference/vmp/nodes/categorical.py:107: > FutureWarning: Using a non-tuple sequence for multidimensional indexing is > deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this > will be interpreted as an array index, `arr[np.array(seq)]`, which will > result either in an error or a different result. > u0[[np.arange(np.size(x)), np.ravel(x)]] = 1 > ok > Test the creation of CategoricalMarkovChain object ... ok > Test the message of CategoricalMarkovChain to child ... ok > Test random sampling of categorical Markov chain ... ok > Test the creation of Concatenate node ... ok > Test the mask handling in Concatenate node ... ok > Test the message to child of Concatenate node. ... ok > Test the message to parents of Concatenate node. ... ok > Test the mask message to parent of Tile node. ... ok > Test the moments of Tile node. ... ok > Test the parent message of Tile node. ... ok > Test the constant moments of Dirichlet nodes. ... ok > Test the creation of Dirichlet nodes. ... ok > Test the moments of Dirichlet nodes. ... ok > Test the message from SumMultiply to its children. ... ok > Test the message from SumMultiply node to its parents. ... ok > Test that the parent nodes are validated properly in SumMultiply ... ok > test_lower_bound_contribution > (bayespy.inference.vmp.nodes.tests.test_gamma.TestGamma) ... ok > Test standard gradient of a Gamma node. ... ok > Test Riemannian gradient of a Gamma node. ... ok > Test the creation of Gate node ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bayespy/build/bayespy/inference/vmp/nodes/categorical.py:43: > FutureWarning: Using a non-tuple sequence for multidimensional indexing is > deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this > will be interpreted as an array index, `arr[np.array(seq)]`, which will > result either in an error or a different result. > u0[[np.arange(np.size(x)), np.ravel(x)]] = 1 > ok > Test the mask handling in Gate node ... ok > Test the message to child of Gate node. ... ok > Test the message to parents of Gate node. ... ok > test_message_to_parents > (bayespy.inference.vmp.nodes.tests.test_gaussian.TestConcatGaussian) ... ok > test_moments > (bayespy.inference.vmp.nodes.tests.test_gaussian.TestConcatGaussian) ... ok > Check gradient passed to inputs parent node ... ok > Test the constructor of GaussianARD ... ok > Test initialization methods of GaussianARD ... ok > Test the variational Bayesian lower bound term for GaussianARD. ... ok > Test moments of GaussianARD. ... ok > Test the message from GaussianARD the 2nd parent (alpha). ... ok > Test that GaussianARD computes the message to the 1st parent correctly. ... ok > Check gradient passed to inputs parent node ... ok > Test the rotation of Gaussian ARD arrays. ... ok > test_rotate_plates > (bayespy.inference.vmp.nodes.tests.test_gaussian.TestGaussianARD) ... ok > Test the Gaussian array covariance rotation. ... ok > Test the creation of GaussianGamma node ... ok > Test the mask handling in GaussianGamma node ... ok > Test the message to child of GaussianGamma node. ... ok > test_messages > (bayespy.inference.vmp.nodes.tests.test_gaussian.TestGaussianGamma) ... ok > Test standard gradient of a Gaussian node. ... ok > Test Riemannian gradient of a Gaussian node. ... ok > test_message_to_A > (bayespy.inference.vmp.nodes.tests.test_gaussian_markov_chain.TestGaussianMarkovChain) > ... ok > test_message_to_Lambda0 > (bayespy.inference.vmp.nodes.tests.test_gaussian_markov_chain.TestGaussianMarkovChain) > ... ok > Test the updating of GaussianMarkovChain. ... ok > test_message_to_mu0 > (bayespy.inference.vmp.nodes.tests.test_gaussian_markov_chain.TestGaussianMarkovChain) > ... ok > Check gradient passed to inputs parent node ... ok > Check gradient passed to inputs parent node ... ok > test_message_to_v > (bayespy.inference.vmp.nodes.tests.test_gaussian_markov_chain.TestGaussianMarkovChain) > ... ok > Test that plates are handled correctly. ... ok > Test the posterior estimation of GaussianMarkovChain. ... ok > test_message_to_B > (bayespy.inference.vmp.nodes.tests.test_gaussian_markov_chain.TestVaryingGaussianMarkovChain) > ... ok > test_message_to_Lambda > (bayespy.inference.vmp.nodes.tests.test_gaussian_markov_chain.TestVaryingGaussianMarkovChain) > ... ok > test_message_to_S > (bayespy.inference.vmp.nodes.tests.test_gaussian_markov_chain.TestVaryingGaussianMarkovChain) > ... ok > test_message_to_child > (bayespy.inference.vmp.nodes.tests.test_gaussian_markov_chain.TestVaryingGaussianMarkovChain) > ... ok > test_message_to_mu > (bayespy.inference.vmp.nodes.tests.test_gaussian_markov_chain.TestVaryingGaussianMarkovChain) > ... ok > test_message_to_v > (bayespy.inference.vmp.nodes.tests.test_gaussian_markov_chain.TestVaryingGaussianMarkovChain) > ... ok > Test that VaryingGaussianMarkovChain deduces plates correctly ... ok > test_deterministic_mappings > (bayespy.inference.vmp.nodes.tests.test_mixture.TestMixture) ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bayespy/build/bayespy/inference/vmp/nodes/dirichlet.py:91: > RuntimeWarning: divide by zero encountered in log > logp = np.log(p) > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bayespy/build/bayespy/inference/vmp/nodes/categorical.py:107: > FutureWarning: Using a non-tuple sequence for multidimensional indexing is > deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this > will be interpreted as an array index, `arr[np.array(seq)]`, which will > result either in an error or a different result. > u0[[np.arange(np.size(x)), np.ravel(x)]] = 1 > ok > Test the creation of Mixture node ... ok > Test log likelihood lower bound for Mixture node ... ok > Test the mask handling in Mixture node ... ok > Test the message to child of Mixture node. ... ok > Test the message to parents of Mixture node. ... ok > Test multinomial mixture ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bayespy/build/bayespy/inference/vmp/nodes/categorical.py:43: > FutureWarning: Using a non-tuple sequence for multidimensional indexing is > deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this > will be interpreted as an array index, `arr[np.array(seq)]`, which will > result either in an error or a different result. > u0[[np.arange(np.size(x)), np.ravel(x)]] = 1 > ok > Test random sampling of mixture node ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bayespy/build/bayespy/inference/vmp/nodes/categorical.py:43: > FutureWarning: Using a non-tuple sequence for multidimensional indexing is > deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this > will be interpreted as an array index, `arr[np.array(seq)]`, which will > result either in an error or a different result. > u0[[np.arange(np.size(x)), np.ravel(x)]] = 1 > ok > Test the creation of multinomial nodes. ... ok > Test lower bound for multinomial node. ... ok > Test multinomial mixture ... ok > Test the moments of multinomial nodes. ... ok > Tests complex conversions for moment classes ... ok > Test the general sum-multiply function for message computations ... ok > Test plate handling in _message_to_parent. ... ok > Test the constructor of the X[..] node operator. ... ok > Test message to child of X[..] node operator. ... ok > Test message to parent of X[..] node operator. ... ok > Test the creation of Poisson nodes. ... ok > Test the moments of Poisson nodes. ... ok > Test parent message computation in Take node ... ok > Test moments computation in Take node ... ok > Test that the parent nodes are validated properly ... ok > test_plates_multiplier_from_parent > (bayespy.inference.vmp.nodes.tests.test_take.TestTake) ... ok > Test the Wishart VB lower bound ... ok > Test the moments of Wishart node ... ok > test_annealing (bayespy.inference.vmp.tests.test_annealing.TestVB) ... ok > Test the speed-up rotation of Gaussian ARD arrays. ... ok > Test gradient of the rotation cost function for Gaussian ARD arrays. ... ok > Test the cost function of the speed-up rotation for Markov chain ... ok > Test the gradient of the speed-up rotation for Markov chain ... ok > Test the speed-up rotation of Markov chain with time-varying dynamics ... ok > Test the gradient of the rotation for MC with time-varying dynamics ... ok > Test the Gaussian elimination algorithm for block-banded matrices. ... ok > Test dot product multiple multi-dimensional arrays. ... ok > Test the add_axes method. ... ok > test_is_shape_subset (bayespy.utils.tests.test_misc.TestBroadcasting) ... ok > Test the ceil division ... ok > test_invpsi (bayespy.utils.tests.test_misc.TestInvPsi) ... ok > Test the ceil division ... ok > Test the ceil division ... ok > test_multiply_shapes (bayespy.utils.tests.test_misc.TestMultiplyShapes) ... ok > test_put_simple (bayespy.utils.tests.test_misc.TestPutSimple) ... ok > Test misc.sum_multiply. ... ok > Test the results of alpha-beta recursion for Markov chains ... ok > test_categorical (bayespy.utils.tests.test_random.TestCeilDiv) ... ok > Test random sampling from the Dirichlet distribution. ... ok > Failure: ModuleNotFoundError (No module named 'pytest') ... ERROR > > ====================================================================== > ERROR: Failure: ModuleNotFoundError (No module named 'pytest') > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest > raise self.exc_val.with_traceback(self.tb) > File "/usr/lib/python3/dist-packages/nose/loader.py", line 417, in > loadTestsFromName > addr.filename, addr.module) > File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in > importFromPath > return self.importFromDir(dir_path, fqname) > File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in > importFromDir > mod = load_module(part_fqname, fh, filename, desc) > File "/usr/lib/python3.7/imp.py", line 234, in load_module > return load_source(name, filename, file) > File "/usr/lib/python3.7/imp.py", line 171, in load_source > module = _load(spec) > File "<frozen importlib._bootstrap>", line 696, in _load > File "<frozen importlib._bootstrap>", line 677, in _load_unlocked > File "<frozen importlib._bootstrap_external>", line 728, in exec_module > File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed > File > "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bayespy/build/bayespy/tests/test_plot.py", > line 27, in <module> > @image_comparison(baseline_images=['gaussian_mixture'], > extensions=['png'], remove_text=True) > File "/usr/lib/python3/dist-packages/matplotlib/testing/decorators.py", > line 354, in image_comparison > savefig_kwargs=savefig_kwarg, style=style) > File "/usr/lib/python3/dist-packages/matplotlib/testing/decorators.py", > line 233, in _pytest_image_comparison > import pytest > ModuleNotFoundError: No module named 'pytest' > > ---------------------------------------------------------------------- > Ran 125 tests in 7.318s > > FAILED (errors=1) > E: pybuild pybuild:352: test: plugin distutils failed with: exit code=1: cd > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_bayespy/build; python3.7 -m nose -v > dh_auto_test: error: pybuild --test --test-nose -i python{version} -p "3.7 > 3.8" returned exit code 13 The full build log is available from: http://qa-logs.debian.net/2020/03/21/python-bayespy_0.5.18-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Source: python-bayespy Source-Version: 0.5.18-3 Done: Graham Inggs <[email protected]> We believe that the bug you reported is fixed in the latest version of python-bayespy, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Graham Inggs <[email protected]> (supplier of updated python-bayespy package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 09 Jul 2020 14:34:54 +0000 Source: python-bayespy Architecture: source Version: 0.5.18-3 Distribution: unstable Urgency: medium Maintainer: Debian QA Group <[email protected]> Changed-By: Graham Inggs <[email protected]> Closes: 954590 Changes: python-bayespy (0.5.18-3) unstable; urgency=medium . * QA Upload * Fix FTBFS with recent matplotlib (Closes: #954590) - Add build and test dependencies on python3-pytest - Adjust absolute tolerance for some tests * Switch to debhelper 13 * Set Rules-Requires-Root: no * Bump Standards-Version to 4.5.0, no changes Checksums-Sha1: 33745c2fc9adaee90fd41dbd8b5c4ae1079de29f 2298 python-bayespy_0.5.18-3.dsc 8fed5bd8b16d9f52f2a1b854ed1de1af91c48463 6084 python-bayespy_0.5.18-3.debian.tar.xz Checksums-Sha256: 8610093f0663d6ca990e17f7d17225f5d81c1b841d80daca7e7f50b0e30aebcd 2298 python-bayespy_0.5.18-3.dsc e8fa5386e8d862d4f7d14bdea579419360e37e720fd77015fb957e973f7f22ac 6084 python-bayespy_0.5.18-3.debian.tar.xz Files: 2884dc176966b7057d4abd1a33a8c241 2298 python optional python-bayespy_0.5.18-3.dsc 8e538eb54f70d7334bd93f3381d3b78b 6084 python optional python-bayespy_0.5.18-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEJeP/LX9Gnb59DU5Qr8/sjmac4cIFAl8HN1cACgkQr8/sjmac 4cIW9hAAimy1K45u4CKE/4XqQGnZL5cYoaOP2BrnzEzIy0JqlPYkAzmxCtcBqpq3 EKqc4FK41nkKufp5mr1WWAsMg4jkeOFKdFruNzq2itT6qxg4IcZPdBR/4X9enjtM 73NwoxAQ4JXweq4LEKuPBYOU4JlN5lFDZFXiagFyYqhFoDDn+siki9aHjPHvFO4s GDRUnzUUGxWK3rFGNlnNxV6To9lD7P40Fty73zfvqaZ7zEGSSw+RrSkZl9C0SII5 1uU5ZPh/68vbNwRjYa9BDIdH5shlwTbM9XR6z7HAamJNGbZYGLLlBJr0nknixP+i /HTs/1yb1vPMjMgXyeZJFswz7qCV8cLTn+x3r1L/nJGGMeRVTGYXIdNwqUhVWIM2 r+5c4crStVrfZwr/8zyvW7RtauIML7fyDYbnU23R3UHjTbZ7g9+L2jrYKSvTV5Zy cwRL8xqgYR68NPdkM9hBRYsKGp43F28bDsli3enNaYx9whMRrccH2O80LnSXR5S+ pHp/lb1ie3XM/RfnTMkp6cDayIVWdEWXfTsdD8DpSbYISESA7RIp0ErjO+cKW86X T3DOSXZSR9XwcVkbTWoJn784lKVgrFVcvXHdjYUwFEpK9/5ngIOILzqYIX7bPNIY 0AGlHAmCR5us//BbFJ6GyX79a5SXSc5dZ8wrDOkFmTGoCUiGzGQ= =EHzD -----END PGP SIGNATURE-----
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