Your message dated Thu, 28 Mar 2019 12:22:01 +0100
with message-id <[email protected]>
and subject line Re: Bug#925902: unblock: cnvkit/0.9.5-3
has caused the Debian Bug report #925902,
regarding unblock: cnvkit/0.9.5-3
to be marked as done.
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925902: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=925902
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--- Begin Message ---
Package: release.debian.org
Severity: normal
User: [email protected]
Usertags: unblock
X-Debbugs-CC: [email protected]
This upload fixes bug #925568 about build reproducibility (failing). It
simply add a small patch to fix the issue adds a metadata entry.
Waiting for a *go* to upload package to unstable.
Thanks
Olivier
debdiff result =>
debian@ccf6b68dd723:/opt/debian/build-area$ debdiff cnvkit_0.9.5-2.dsc
cnvkit_0.9.5-3.dsc
dpkg-source: warning: extracting unsigned source package
(/opt/debian/build-area/cnvkit_0.9.5-3.dsc)
diff -Nru cnvkit-0.9.5/debian/changelog cnvkit-0.9.5/debian/changelog
--- cnvkit-0.9.5/debian/changelog 2019-01-06 12:12:46.000000000 +0000
+++ cnvkit-0.9.5/debian/changelog 2019-03-27 08:00:39.000000000 +0000
@@ -1,3 +1,10 @@
+cnvkit (0.9.5-3) unstable; urgency=medium
+
+ * Fix buster rebuilds (Closes: #925568)
+ d/patches/controldir.patch
+
+ -- Olivier Sallou <[email protected]> Wed, 27 Mar 2019 08:00:39 +0000
+
cnvkit (0.9.5-2) unstable; urgency=medium
[ Jelmer Vernooij ]
diff -Nru cnvkit-0.9.5/debian/patches/controldir
cnvkit-0.9.5/debian/patches/controldir
--- cnvkit-0.9.5/debian/patches/controldir 1970-01-01 00:00:00.000000000
+0000
+++ cnvkit-0.9.5/debian/patches/controldir 2019-03-27 08:00:39.000000000
+0000
@@ -0,0 +1,21 @@
+Subject: do not create dir if it exists
+Description: command tries to create an output dir during tests, even if it
+ already exists, raising an error. Skip creation if already present
+Author: Olivier Sallou <[email protected]>
+Bug: 925568
+Forwaded: no
+Last-Updated: 2019-03-27
+--- a/cnvlib/commands.py
++++ b/cnvlib/commands.py
+@@ -1365,8 +1365,9 @@
+ 'anti' if 'antitarget' in fname else ''))
+ if args.output_dir:
+ if not os.path.isdir(args.output_dir):
+- os.mkdir(args.output_dir)
+- logging.info("Created directory %s", args.output_dir)
++ if not os.path.exists(args.output_dir):
++ os.mkdir(args.output_dir)
++ logging.info("Created directory %s", args.output_dir)
+ outfname = os.path.join(args.output_dir, outfname)
+ tabio.write(garr, outfname)
+
diff -Nru cnvkit-0.9.5/debian/patches/series
cnvkit-0.9.5/debian/patches/series
--- cnvkit-0.9.5/debian/patches/series 2019-01-06 09:41:24.000000000 +0000
+++ cnvkit-0.9.5/debian/patches/series 2019-03-27 08:00:39.000000000 +0000
@@ -1,3 +1,4 @@
no-py-ext
python3compat.patch
spelling
+controldir
diff -Nru cnvkit-0.9.5/debian/upstream/metadata
cnvkit-0.9.5/debian/upstream/metadata
--- cnvkit-0.9.5/debian/upstream/metadata 2018-06-19 21:48:37.000000000
+0000
+++ cnvkit-0.9.5/debian/upstream/metadata 2019-03-27 08:00:39.000000000
+0000
@@ -19,6 +19,6 @@
- Name: OMICtools
Entry: OMICS_11538
- Name: bio.tools
- Entry: NA
- - Name: bio.tools
+ Entry: cnvkit
+ - Name: SciCrunch
Entry: NA
--
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
--- End Message ---
--- Begin Message ---
Hi Olivier,
On 28-03-2019 09:01, olivier sallou wrote:
> This upload fixes bug #925568 about build reproducibility (failing). It
> simply add a small patch to fix the issue adds a metadata entry.
> Waiting for a *go* to upload package to unstable.
I am glad you didn't, otherwise I couldn't unblock it :). Next time,
during a freeze, please be more verbose in your changelog and ALSO
mention you added yourself to the uploaders and you updated the metadata.
unblocked, thanks.
Paul
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--- End Message ---
