Your message dated Fri, 11 Sep 2026 09:36:24 +0200
with message-id <[email protected]>
and subject line Re: Bug#1140389: transition: hdf5
has caused the Debian Bug report #1140389,
regarding transition: hdf5
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1140389: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140389
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: release.debian.org
Severity: normal
User: [email protected]
Usertags: transition
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
I hereby request a transition slot for hdf5 2.1.0 currently in experimental.
Reverse dependencies status:
* 154 total reverse dependencies
* 118 checked OK
* 7 not in testing (FTBFS in unstable)
dmrgpp KO # FTBFS - Not in testing
openms KO # FTBFS - Not in testing
ufo-filters KO # FTBFS - Not in testing
pyhst2 KO # FTBFS - Not in testing
r-bioc-ioniser KO # FTBFS - Not in testing
siconos KO # FTBFS - Not in testing
r-bioc-gsva KO # FTBFS - Not in testing
* 17 bugs opened with attached patch
gmtsar OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139600
gwyddion OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139602
h5py OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139604
libtrexio OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139605
libvbz-hdf-plugin OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139606
mapsembler2 OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139607
satdump OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139608
slurm-wlm OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139609
slurm-wlm-contrib OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139612
unifrac-tools OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139615
freefem++ OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139617
libminc OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139618
scilab OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139619
dolfin OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139620
cctbx OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140089
insighttoolkit5 OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139623
silx OK # Patch -
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139569
* 4 bugs opened with no fix yet
haskell-hdf5 KO #
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139497
r-cran-hdf5r KO #
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139545
silo-llnl KO #
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139553
xmds2 KO #
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139554
* 1 RM bug for a package not suitable for unstable anymore
med-fichier KO
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139324
* 7 not checked yet because of a failing build-dependency
hkl KO (haskell-hdf5)
r-bioc-rhdf5 KO (r-bioc-rhdf5filters)
r-bioc-hdf5array KO (r-bioc-rhdf5)
r-bioc-alabaster.matrix KO (r-bioc-rhdf5)
r-bioc-bsseq KO (r-bioc-rhdf5)
r-bioc-dropletutils KO (r-bioc-hdf5array)
r-bioc-mofa2 KO (r-bioc-rhdf5)
I've set the usertag "hdf5-2.1.0-transition" with user "[email protected]"
to track the related bugs.
https://bugs.debian.org/cgi-bin/[email protected];tag=hdf5-2.1.0-transition
Ben file:
title = "hdf5";
is_affected = .depends ~ /libhdf5-310|libhdf5-openmpi-310|libhdf5-mpich-310/ |
.depends ~ /libhdf5-320|libhdf5-openmpi-320|libhdf5-mpich-320/;
is_good = .depends ~ /libhdf5-320|libhdf5-openmpi-320|libhdf5-mpich-320/;
is_bad = .depends ~ /libhdf5-310|libhdf5-openmpi-310|libhdf5-mpich-310/;
Thanks in advance,
_g.
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--- End Message ---
--- Begin Message ---
On 2026-08-10 21:46:07 +0200, Gilles Filippini wrote:
> Hi Emilio,
>
> Emilio Pozuelo Monfort a écrit le 10/08/2026 à 12:55 :
> > Control: tags -1 pending
> >
> > On 05/08/2026 13:29, Gilles Filippini wrote:
> > > Hi Emilio,
> > >
> > > Emilio Pozuelo Monfort a écrit le 03/08/2026 à 17:33 :
> > > > Control: tags -1 confirmed
> > > >
> > > > On 19/06/2026 15:25, Gilles Filippini wrote:
> > > > > Package: release.debian.org
> > > > > Severity: normal
> > > > > User: [email protected]
> > > > > Usertags: transition
> > > > >
> > > > > I hereby request a transition slot for hdf5 2.1.0 currently in
> > > > > experimental.
> > > > >
> > > > > Reverse dependencies status:
> > > > >
> > > > > * 154 total reverse dependencies
> > > > > * 118 checked OK
> > > > > * 7 not in testing (FTBFS in unstable)
> > > > > dmrgpp KO # FTBFS - Not in testing
> > > > > openms KO # FTBFS - Not in testing
> > > > > ufo-filters KO # FTBFS - Not in testing
> > > > > pyhst2 KO # FTBFS - Not in testing
> > > > > r-bioc-ioniser KO # FTBFS - Not in testing
> > > > > siconos KO # FTBFS - Not in testing
> > > > > r-bioc-gsva KO # FTBFS - Not in testing
> > > > > * 17 bugs opened with attached patch
> > > > > gmtsar OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139600
> > > > > gwyddion OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139602
> > > > > h5py OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139604
> > > > > libtrexio OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139605
> > > > > libvbz-hdf-plugin OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139606
> > > > > mapsembler2 OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139607
> > > > > satdump OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139608
> > > > > slurm-wlm OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139609
> > > > > slurm-wlm-contrib OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139612
> > > > > unifrac-tools OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139615
> > > > > freefem++ OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139617
> > > > > libminc OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139618
> > > > > scilab OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139619
> > > > > dolfin OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139620
> > > > > cctbx OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140089
> > > > > insighttoolkit5 OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139623
> > > > > silx OK # Patch - https://
> > > > > bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139569
> > > > > * 4 bugs opened with no fix yet
> > > > > haskell-hdf5 KO # https://bugs.debian.org/cgi-
> > > > > bin/bugreport.cgi?bug=1139497
> > > > > r-cran-hdf5r KO # https://bugs.debian.org/cgi-
> > > > > bin/bugreport.cgi?bug=1139545
> > > > > silo-llnl KO # https://bugs.debian.org/cgi-
> > > > > bin/bugreport.cgi?bug=1139553
> > > > > xmds2 KO # https://bugs.debian.org/cgi-
> > > > > bin/bugreport.cgi?bug=1139554
> > > > > * 1 RM bug for a package not suitable for unstable anymore
> > > > > med-fichier KO https://bugs.debian.org/cgi-
> > > > > bin/bugreport.cgi?bug=1139324
> > > > > * 7 not checked yet because of a failing build-dependency
> > > > > hkl KO (haskell-hdf5)
> > > > > r-bioc-rhdf5 KO (r-bioc-rhdf5filters)
> > > > > r-bioc-hdf5array KO (r-bioc-rhdf5)
> > > > > r-bioc-alabaster.matrix KO (r-bioc-rhdf5)
> > > > > r-bioc-bsseq KO (r-bioc-rhdf5)
> > > > > r-bioc-dropletutils KO (r-bioc-hdf5array)
> > > > > r-bioc-mofa2 KO (r-bioc-rhdf5)
> > > > >
> > > > > I've set the usertag "hdf5-2.1.0-transition" with user
> > > > > "[email protected]"
> > > > > to track the related bugs.
> > > > >
> > > > > https://bugs.debian.org/cgi-bin/pkgreport.cgi?
> > > > > [email protected];tag=hdf5-2.1.0-transition
> > > > Please go ahead and bump the severity of the remaining bugs to serious.
> > >
> > > Uploaded!
> >
> > hdf5 has migrated, though some rdeps still need to migrate.
>
> Great! Thanks a lot!
They migrated and the old binaries got removed from testing.
Closing
--
Sebastian Ramacher
--- End Message ---
