Hi,
bug #601568 (Bug in scoring matrix incurs errors in indel calling.) in
bwa/0.5.8a-1 is serios according to upstream and fixed in bwa/0.5.8c-1
which is just in unstable. The package itself is of some importance for
the Debian Med team because it concerns new generation sequencing a
quite chalanging field in genetic research. It would be great if you
could unblock bwa/0.5.8c-1 to have the fixed version in Squeeze.
Kind regards and thanks for your work on a great Debian release
Andreas.
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