* Michael Crusoe <michael.cru...@gmail.com> [180413 14:30]: > Due to a bug the binary package was deleted in unstable which is blocking > me as a DM from uploading the new version:
Had a quick look, but on my 4-core machine the tests are failing, snippet of one: test: crb-blast should not find fake scaffold name. : E =============================================================================== Error: test: crb-blast should not find fake scaffold name. (TestCRBBlast): RuntimeError: BLAST Error: USAGE blastx [-h] [-help] [-import_search_strategy filename] [-export_search_strategy filename] [-task task_name] [-db database_name] [-dbsize num_letters] [-gilist filename] [-seqidlist filename] [-negative_gilist filename] [-negative_seqidlist filename] [-entrez_query entrez_query] [-db_soft_mask filtering_algorithm] [-db_hard_mask filtering_algorithm] [-subject subject_input_file] [-subject_loc range] [-query input_file] [-out output_file] [-evalue evalue] [-word_size int_value] [-gapopen open_penalty] [-gapextend extend_penalty] [-qcov_hsp_perc float_value] [-max_hsps int_value] [-xdrop_ungap float_value] [-xdrop_gap float_value] [-xdrop_gap_final float_value] [-searchsp int_value] [-sum_stats bool_value] [-max_intron_length length] [-seg SEG_options] [-soft_masking soft_masking] [-matrix matrix_name] [-threshold float_value] [-culling_limit int_value] [-best_hit_overhang float_value] [-best_hit_score_edge float_value] [-window_size int_value] [-ungapped] [-lcase_masking] [-query_loc range] [-strand strand] [-parse_deflines] [-query_gencode int_value] [-outfmt format] [-show_gis] [-num_descriptions int_value] [-num_alignments int_value] [-line_length line_length] [-html] [-max_target_seqs num_sequences] [-num_threads int_value] [-remote] [-comp_based_stats compo] [-use_sw_tback] [-version] DESCRIPTION Translated Query-Protein Subject BLAST 2.7.1+ Use '-help' to print detailed descriptions of command line arguments ======================================================================== Error: Argument "num_threads". Illegal value, expected (>=1 and =<4): `6' Error: (CArgException::eConstraint) Argument "num_threads". Illegal value, expected (>=1 and =<4): `6' /<<PKGBUILDDIR>>/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/crb-blast.rb:214:in `run_blast_with_threads' /<<PKGBUILDDIR>>/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/crb-blast.rb:173:in `run_blast' I assume this is caused by your fewer-threads patch :) Chris