Package: src:deal.ii Version: 9.0.1-1 Severity: normal Tags: sid bullseye User: [email protected] Usertags: ftbfs-gcc-9
Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-9/g++-9, but succeeds to build with gcc-8/g++-8. The severity of this report will be raised before the bullseye release, so nothing has to be done for the buster release. The full build log can be found at: http://people.debian.org/~doko/logs/gcc9-20190321/deal.ii_9.0.1-1_unstable_gcc9.log The last lines of the build log are at the end of this report. To build with GCC 9, either set CC=gcc-9 CXX=g++-9 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-9/porting_to.html GCC 9 also passes the linker option --as-needed by default; typical build issues are passing libraries before object files to the linker, or underlinking of convenience libraries built from the same source. [...] *** abort 11% tests passed, 17 tests failed out of 19 Total Test time (real) = 212.00 sec The following tests FAILED: 1 - step.debug (Failed) 3 - affinity.debug (Failed) 4 - mpi.debug (Failed) 5 - tbb.debug (Failed) 6 - p4est.debug (Failed) 7 - step-petsc.debug (Failed) 8 - step-slepc.debug (Failed) 9 - step-trilinos.debug (Failed) 10 - lapack.debug (Failed) 11 - umfpack.debug (Failed) 12 - gsl.debug (Failed) 14 - arpack.debug (Failed) 15 - sundials-ida.debug (Failed) 16 - assimp.debug (Failed) 17 - scalapack.debug (Failed) 18 - boost_zlib.debug (Failed) 19 - gmsh.debug (Failed) Errors while running CTest *************************************************************************** ** Error: Some of the quick tests failed. ** *************************************************************************** Please scroll up or check the file tests/quick_tests/quicktests.log for the error messages. If you are unable to fix the problems, see the FAQ or write to the mailing list linked at http://www.dealii.org The affinity test can fail when you are linking in a library like BLAS which uses OpenMP. Even without calling any BLAS functions, OpenMP messes with the thread affinity which causes TBB to run single-threaded only. You can fix this by exporting OMP_NUM_THREADS=1. Also see GOMP_CPU_AFFINITY and OMP_PROC_BIND. The p4est test can fail if you are running an OpenMPI version before 1.5. This is a known problem and the only work around is to update to a more recent version or use a different MPI library like MPICH. Additional information about PETSc issues is available at: http://www.dealii.org/developer/external-libs/petsc.html CMake Error at /<<PKGBUILDDIR>>/tests/quick_tests/run.cmake:68 (MESSAGE): make[5]: *** [tests/quick_tests/CMakeFiles/test.dir/build.make:61: tests/quick_tests/CMakeFiles/test] Error 1 make[5]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[4]: *** [CMakeFiles/Makefile2:10612: tests/quick_tests/CMakeFiles/test.dir/all] Error 2 make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:10619: tests/quick_tests/CMakeFiles/test.dir/rule] Error 2 make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[2]: *** [Makefile:3508: test] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' dh_auto_test: cd obj-x86_64-linux-gnu && make -j1 test ARGS\+=-j1 returned exit code 2 make[1]: *** [debian/rules:50: override_dh_auto_test] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:7: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -- debian-science-maintainers mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
