Your message dated Sun, 22 Dec 2019 21:04:56 +0000
with message-id <[email protected]>
and subject line Bug#941954: fixed in pytables 3.6.1-1
has caused the Debian Bug report #941954,
regarding craashes with AttributeError: 'UnImplemented' object has no attribute
'size_in_memory'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
941954: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=941954
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: python3-tables
Version: 3.5.2-3
Severity: normal
File: /usr/bin/pttree
Tags: upstream
Trying it on a file (in https://www.nwb.org/nwb-neurophysiology/ nwb format)
results in the listed below exception. This repository/file is available via
git-annex from
http://datasets.datalad.org/labs/churchland/najafi-2018-nwb/.git/
(git-annex)hopa:~/proj/dandi/nwb-datasets/najafi-2018-nwb[master]data/FN_dataSharing/nwb
$> pttree mouse1_fni16_150818_001_ch2-PnevPanResults-170808-180842.nwb
/usr/lib/python3/dist-packages/tables/attributeset.py:312: DataTypeWarning:
Unsupported type for attribute '.specloc' in node '/'. Offending HDF5 class: 7
value = self._g_getattr(self._v_node, name)
/usr/lib/python3/dist-packages/tables/group.py:1208: UserWarning: problems
loading leaf ``/file_create_date``::
variable length strings are not supported yet
The leaf will become an ``UnImplemented`` node.
% (self._g_join(childname), exc))
/usr/lib/python3/dist-packages/tables/group.py:1208: UserWarning: problems
loading leaf ``/identifier``::
variable length strings are not supported yet
The leaf will become an ``UnImplemented`` node.
% (self._g_join(childname), exc))
/usr/lib/python3/dist-packages/tables/group.py:1208: UserWarning: problems
loading leaf ``/session_description``::
variable length strings are not supported yet
The leaf will become an ``UnImplemented`` node.
% (self._g_join(childname), exc))
/usr/lib/python3/dist-packages/tables/group.py:1208: UserWarning: problems
loading leaf ``/session_start_time``::
variable length strings are not supported yet
The leaf will become an ``UnImplemented`` node.
% (self._g_join(childname), exc))
/usr/lib/python3/dist-packages/tables/group.py:1208: UserWarning: problems
loading leaf ``/timestamps_reference_time``::
variable length strings are not supported yet
The leaf will become an ``UnImplemented`` node.
% (self._g_join(childname), exc))
Traceback (most recent call last):
File "/usr/bin/pttree", line 11, in <module>
load_entry_point('tables==3.5.2', 'console_scripts', 'pttree')()
File "/usr/lib/python3/dist-packages/tables/scripts/pttree.py", line 116, in
main
tree_str = get_tree_str(f, nodename, **args.__dict__)
File "/usr/lib/python3/dist-packages/tables/scripts/pttree.py", line 186, in
get_tree_str
m = node.size_in_memory
AttributeError: 'UnImplemented' object has no attribute 'size_in_memory'
-- System Information:
Debian Release: buster/sid
APT prefers unstable
APT policy: (600, 'unstable'), (300, 'experimental'), (100,
'unstable-debug'), (100, 'stable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 4.19.0-6-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8),
LANGUAGE=en_US.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages python3-tables depends on:
ii python-tables-data 3.5.2-3
ii python3 3.7.2-1
ii python3-numexpr 2.6.9-1
ii python3-numpy 1:1.16.2-1
ii python3-six 1.12.0-1
ii python3-tables-lib 3.5.2-3
python3-tables recommends no packages.
Versions of packages python3-tables suggests:
pn python-tables-doc <none>
ii python3-netcdf4 1.4.2-1+b1
ii vitables 2.1-1
-- debconf-show failed
--- End Message ---
--- Begin Message ---
Source: pytables
Source-Version: 3.6.1-1
We believe that the bug you reported is fixed in the latest version of
pytables, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Antonio Valentino <[email protected]> (supplier of updated pytables
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 21 Dec 2019 17:29:37 +0000
Source: pytables
Architecture: source
Version: 3.6.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Antonio Valentino <[email protected]>
Closes: 941954 945282
Changes:
pytables (3.6.1-1) unstable; urgency=medium
.
* New upstream release.
* Drop manpage for nc2h5. the tool has been already removed some
time ago.
* debian/patches:
- drop 0005-Drop-mock-for-requirements.txt.patch and
0007-Compat-with-Python-3.8.patch: applied upstream
- refresh and renumber remaining patches
- new 0006-Fix-pttree.patch (Closes: #941954)
- new 0007-Fix-syntax-warnings.patch (Closes: #945282)
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