Bug#925729: marked as done (lammps: ftbfs with GCC-9)

[Debian Bug Tracking System]

Your message dated Sun, 29 Dec 2019 11:00:14 +0000
with message-id <e1ilwiw-00088y...@fasolo.debian.org>
and subject line Bug#925729: fixed in lammps 20190919+dfsg2-1
has caused the Debian Bug report #925729,
regarding lammps: ftbfs with GCC-9
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
925729: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=925729
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Package: src:lammps
Version: 0~20181211.gitad1b1897d+dfsg1-2
Severity: normal
Tags: sid bullseye
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-9

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-9/g++-9, but succeeds to build with gcc-8/g++-8. The
severity of this report will be raised before the bullseye release,
so nothing has to be done for the buster release.

The full build log can be found at:
http://people.debian.org/~doko/logs/gcc9-20190321/lammps_0~20181211.gitad1b1897d+dfsg1-2_unstable_gcc9.log
The last lines of the build log are at the end of this report.

To build with GCC 9, either set CC=gcc-9 CXX=g++-9 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t=experimental install g++ 

Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-9/porting_to.html

GCC 9 also passes the linker option --as-needed by default; typical
build issues are passing libraries before object files to the linker,
or underlinking of convenience libraries built from the same source.

[...]
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:730:21: 
warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', 
declared with attribute warn_unused_result [-Wunused-result]
  730 |   if (me == 0) fread(&ngroup,sizeof(int),1,fp);
      |                ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:742:23: 
warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', 
declared with attribute warn_unused_result [-Wunused-result]
  742 |     if (me == 0) fread(&n,sizeof(int),1,fp);
      |                  ~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:746:25: 
warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', 
declared with attribute warn_unused_result [-Wunused-result]
  746 |       if (me == 0) fread(names[i],sizeof(char),n,fp);
      |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 31%] Building CXX object 
CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 
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-DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 
-DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 
-DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 
-DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 
-DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 
-DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 
-DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 
-DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)"
 
-DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)"
 -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 
-DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 
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 -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_group.cpp"
[ 31%] Building CXX object 
CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_neigh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 
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-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" 
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-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact"
 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include"
 -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include"  -g 
-O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1=. 
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 -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_zero.cpp"
[ 32%] Building CXX object 
CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/info.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 
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-DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 
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-DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 
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-DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 
-DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 
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-DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)"
 
-DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)"
 -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 
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-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src" 
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-I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu 
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-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 
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-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 
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-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" 
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-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" 
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-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" 
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-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" 
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-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact"
 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include"
 -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include"  -g 
-O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1=. 
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 
-D_FORTIFY_SOURCE=2 -fopenmp    -o 
"CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/info.cpp.o"
 -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/info.cpp"
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp: In 
member function 'virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp:320:21:
 warning: ignoring return value of 'size_t fread(void*, size_t, size_t, 
FILE*)', declared with attribute warn_unused_result [-Wunused-result]
  320 |   if (me == 0) fread(&nstyles,sizeof(int),1,fp);
      |                ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp:329:23:
 warning: ignoring return value of 'size_t fread(void*, size_t, size_t, 
FILE*)', declared with attribute warn_unused_result [-Wunused-result]
  329 |     if (me == 0) fread(&n,sizeof(int),1,fp);
      |                  ~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp:332:23:
 warning: ignoring return value of 'size_t fread(void*, size_t, size_t, 
FILE*)', declared with attribute warn_unused_result [-Wunused-result]
  332 |     if (me == 0) fread(keywords[m],sizeof(char),n,fp);
      |                  ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 32%] Building CXX object 
CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/input.cpp.o
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-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" 
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-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact"
 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include"
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-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" 
-I/usr/include/hdf5/serial 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact"
 
-I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include"
 -I"/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include"  -g 
-O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1=. 
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 
-D_FORTIFY_SOURCE=2 -fopenmp    -o 
"CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp.o"
 -c "/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp"
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp: In member 
function 'void LAMMPS_NS::KSpace::qsum_qsq()':
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp:280:3: error: 
'nlocal' not specified in enclosing 'parallel'
  280 |   for (int i = 0; i < nlocal; i++) {
      |   ^~~
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp:278:9: error: 
enclosing 'parallel'
  278 | #pragma omp parallel for default(none) 
reduction(+:qsum_local,qsqsum_local)
      |         ^~~
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp:281:19: 
error: 'q' not specified in enclosing 'parallel'
  281 |     qsum_local += q[i];
      |                   ^
/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp:278:9: error: 
enclosing 'parallel'
  278 | #pragma omp parallel for default(none) 
reduction(+:qsum_local,qsqsum_local)
      |         ^~~
make[3]: *** [CMakeFiles/lmp.dir/build.make:2757: 
CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp.o]
 Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory 
'/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build'
make[2]: *** [CMakeFiles/Makefile2:303: CMakeFiles/lmp.dir/all] Error 2
make[2]: Leaving directory 
'/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build'
make[1]: *** [Makefile:133: all] Error 2
make[1]: Leaving directory 
'/<<BUILDDIR>>/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build'
dh_auto_build: cd debian/build && make -j4 "INSTALL=install 
--strip-program=true" returned exit code 2
make: *** [debian/rules:10: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit 
status 2

--- End Message ---

--- Begin Message ---

Source: lammps
Source-Version: 20190919+dfsg2-1

We believe that the bug you reported is fixed in the latest version of
lammps, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 925...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Drew Parsons <dpars...@debian.org> (supplier of updated lammps package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Thu, 31 Oct 2019 21:51:12 +0800
Source: lammps
Binary: lammps lammps-data lammps-dbgsym lammps-doc lammps-examples 
liblammps-dev liblammps0 liblammps0-dbgsym python3-lammps
Architecture: source all amd64
Version: 20190919+dfsg2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Drew Parsons <dpars...@debian.org>
Description:
 lammps     - Molecular Dynamics Simulator
 lammps-data - Molecular Dynamics Simulator. Data (potentials)
 lammps-doc - Molecular Dynamics Simulator (documentation)
 lammps-examples - Molecular Dynamics Simulator (examples)
 liblammps-dev - Molecular Dynamics Simulator (dev files)
 liblammps0 - Molecular Dynamics Simulator (shared library)
 python3-lammps - Molecular Dynamics Simulator
Closes: 924189 925729 936814
Changes:
 lammps (20190919+dfsg2-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream patch release 19 Sep 2019. Closes: #925729.
   * move Files-Excluded to Source stanza of debian/copyright.
     Enables mk-origtargz to removed unwanted files in upstream tarball
     - drop examples/log.* (no longer present in upstream tarball)
     - do not exclude doc/utils/sphinx-config from orig tarball.
       Needed to build docs with `make html`.
       sphinx-config/_themes/lammps_theme uses MIT licence.
   * Standards-Version: 4.4.1
   * debhelper compatibility level 12: debhelper-compat (= 12)
   * Build-Depends: python3-all-dev. Closes: #936814.
   * Build-Depends: libvtk7-dev, libhdf5-mpi-dev
   * Build-Depends: libvtk7-qt-dev. Causes USER-VTK to build against
     Qt5 (via vtkGUISupportQt).
   * Debian patch build_docs_direct.patch eliminates virtualenv,
     enabling `make html` to build docs directly. Uses python3 only.
   * provide shared library in liblammps-dev, liblammps0
   * provide python module in python3-lammps (with examples)
     - Debian patch python_lib_soname.patch points the LAMMPS library
       used in lammps.py at soversion .so.0 instead of .so.
       Allows the python module to depend only on liblammps0, otherwise
       liblammps-dev would also have to be installed.
   * provide sample scripts and benchmarks in lammps-examples
     - install in /usr/share/lammps to link to potentials.
       Closes: #924189.
   * emacs mode installed by lammps-data
   * mark -doc, -data, -examples as Multi-Arch: foreign
   * disable dh_dwz on liblammps.so.0 (elf_update failed)
   * Debian patch fix_man.patch fixes section and space delimiter in
     lammps.1.
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lammps-examples_20190919+dfsg2-1_all.deb
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Files:
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lammps_20190919+dfsg2-1.dsc
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lammps_20190919+dfsg2.orig.tar.xz
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lammps_20190919+dfsg2-1.debian.tar.xz
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lammps-data_20190919+dfsg2-1_all.deb
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lammps-dbgsym_20190919+dfsg2-1_amd64.deb
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lammps-doc_20190919+dfsg2-1_all.deb
 d658ae129e5eada10473d7e4bfa48796 31808148 doc optional 
lammps-examples_20190919+dfsg2-1_all.deb
 3bd1e3d1a270a24df10dd66ac5a231eb 26585 science optional 
lammps_20190919+dfsg2-1_amd64.buildinfo
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lammps_20190919+dfsg2-1_amd64.deb
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liblammps-dev_20190919+dfsg2-1_amd64.deb
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liblammps0-dbgsym_20190919+dfsg2-1_amd64.deb
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liblammps0_20190919+dfsg2-1_amd64.deb
 693f491607ef84a3d599176443506125 427144 python optional 
python3-lammps_20190919+dfsg2-1_amd64.deb

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--- End Message ---

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