Your message dated Fri, 08 May 2020 15:49:01 +0000
with message-id <[email protected]>
and subject line Bug#957661: fixed in palp 2.1-6
has caused the Debian Bug report #957661,
regarding palp: ftbfs with GCC-10
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
957661: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=957661
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:palp
Version: 2.1-5
Severity: normal
Tags: sid bullseye
User: [email protected]
Usertags: ftbfs-gcc-10
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-10/g++-10, but succeeds to build with gcc-9/g++-9. The
severity of this report will be raised before the bullseye release,
so nothing has to be done for the buster release.
The full build log can be found at:
http://people.debian.org/~doko/logs/gcc10-20200225/palp_2.1-5_unstable_gcc10.log
The last lines of the build log are at the end of this report.
To build with GCC 10, either set CC=gcc-10 CXX=g++-10 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-10/porting_to.html
[...]
615 | wo[0] = woG = (int *) malloc(WM*3*sizeof(int));
| ^~~~~~~~~~~~~~~~~~~~~~~~
gcc -DPACKAGE_NAME=\"palp\" -DPACKAGE_TARNAME=\"palp\"
-DPACKAGE_VERSION=\"2.1\" -DPACKAGE_STRING=\"palp\ 2.1\"
-DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"palp\"
-DVERSION=\"2.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1
-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1
-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1
-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1
-DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2
-DPOLY_Dmax=11 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -c -o
mori_11d_x-Vertex.o `test -f 'Vertex.c' || echo './'`Vertex.c
LG.c: In function ‘WIndex_HTrace’:
LG.c:657:77: warning: ‘__builtin_memset’ writing 16388 bytes into a region of
size 16384 [-Wstringop-overflow=]
657 | for(i=0;i<=N;i++) mask[i]=1<<i; for(i=0;i<=WM;i++)
woG[i]=woS[i]=woA[i]=0;
|
~~~~~~^~
LG.c:655:28: note: at offset 32768 to an object with size 49152 allocated by
‘malloc’ here
655 | wo[0] = woG = (int *) malloc(WM*3*sizeof(int));
| ^~~~~~~~~~~~~~~~~~~~~~~~
gcc -DPACKAGE_NAME=\"palp\" -DPACKAGE_TARNAME=\"palp\"
-DPACKAGE_VERSION=\"2.1\" -DPACKAGE_STRING=\"palp\ 2.1\"
-DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"palp\"
-DVERSION=\"2.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1
-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1
-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1
-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1
-DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2
-DPOLY_Dmax=11 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -c -o
mori_11d_x-Polynf.o `test -f 'Polynf.c' || echo './'`Polynf.c
gcc -DPACKAGE_NAME=\"palp\" -DPACKAGE_TARNAME=\"palp\"
-DPACKAGE_VERSION=\"2.1\" -DPACKAGE_STRING=\"palp\ 2.1\"
-DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"palp\"
-DVERSION=\"2.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1
-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1
-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1
-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1
-DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2
-DPOLY_Dmax=11 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -c -o
mori_11d_x-mori.o `test -f 'mori.c' || echo './'`mori.c
gcc -DPACKAGE_NAME=\"palp\" -DPACKAGE_TARNAME=\"palp\"
-DPACKAGE_VERSION=\"2.1\" -DPACKAGE_STRING=\"palp\ 2.1\"
-DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"palp\"
-DVERSION=\"2.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1
-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1
-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1
-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1
-DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2
-DPOLY_Dmax=11 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -c -o
mori_11d_x-MoriCone.o `test -f 'MoriCone.c' || echo './'`MoriCone.c
MoriCone.c: In function ‘ReadInt’:
MoriCone.c:1418:24: warning: ignoring return value of ‘fscanf’ declared with
attribute ‘warn_unused_result’ [-Wunused-result]
1418 | ungetc(c,inFILE); fscanf(inFILE,"%d",&n);
| ^~~~~~~~~~~~~~~~~~~~~~
gcc -DPACKAGE_NAME=\"palp\" -DPACKAGE_TARNAME=\"palp\"
-DPACKAGE_VERSION=\"2.1\" -DPACKAGE_STRING=\"palp\ 2.1\"
-DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"palp\"
-DVERSION=\"2.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1
-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1
-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1
-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1
-DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2
-DPOLY_Dmax=11 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -c -o
mori_11d_x-SingularInput.o `test -f 'SingularInput.c' || echo
'./'`SingularInput.c
SingularInput.c: In function ‘Read_HyperSurf’:
SingularInput.c:49:3: warning: ignoring return value of ‘fgets’ declared with
attribute ‘warn_unused_result’ [-Wunused-result]
49 | fgets(string, sizeof string, stdin);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SingularInput.c:58:3: warning: ignoring return value of ‘fgets’ declared with
attribute ‘warn_unused_result’ [-Wunused-result]
58 | fgets(string, maxline ,stream);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DPACKAGE_NAME=\"palp\" -DPACKAGE_TARNAME=\"palp\"
-DPACKAGE_VERSION=\"2.1\" -DPACKAGE_STRING=\"palp\ 2.1\"
-DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"palp\"
-DVERSION=\"2.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1
-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1
-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1
-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1
-DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2
-DPOLY_Dmax=11 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -c -o mori_11d_x-LG.o
`test -f 'LG.c' || echo './'`LG.c
LG.c: In function ‘Read_WZ_PP’:
LG.c:38:6: warning: ignoring return value of ‘fscanf’ declared with attribute
‘warn_unused_result’ [-Wunused-result]
38 | fscanf(inFILE,"%d",I);
| ^~~~~~~~~~~~~~~~~~~~~
LG.c:41:17: warning: ignoring return value of ‘fscanf’ declared with attribute
‘warn_unused_result’ [-Wunused-result]
41 | if(IsDigit(C)) fscanf(inFILE,"%d",&I[i]); else break;
| ^~~~~~~~~~~~~~~~~~~~~~~~~
LG.c: In function ‘Read_Weight’:
LG.c:182:6: warning: ignoring return value of ‘fscanf’ declared with attribute
‘warn_unused_result’ [-Wunused-result]
182 | fscanf(inFILE,"%d",I);
| ^~~~~~~~~~~~~~~~~~~~~
LG.c:185:17: warning: ignoring return value of ‘fscanf’ declared with attribute
‘warn_unused_result’ [-Wunused-result]
185 | if(IsDigit(c)) fscanf(inFILE,"%d",&I[i]); else break;
| ^~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DPOLY_Dmax=4 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro
-Wl,-z,now -o poly-4d.x poly_4d_x-Coord.o poly_4d_x-Rat.o poly_4d_x-Vertex.o
poly_4d_x-Polynf.o poly_4d_x-poly.o poly_4d_x-LG.o
gcc -DPOLY_Dmax=4 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro
-Wl,-z,now -o class-4d.x class_4d_x-Coord.o class_4d_x-Rat.o
class_4d_x-Vertex.o class_4d_x-Polynf.o class_4d_x-class.o class_4d_x-Subpoly.o
class_4d_x-Subadd.o class_4d_x-Subdb.o
gcc -DPOLY_Dmax=4 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro
-Wl,-z,now -o cws-4d.x cws_4d_x-Coord.o cws_4d_x-Rat.o cws_4d_x-Vertex.o
cws_4d_x-Polynf.o cws_4d_x-cws.o cws_4d_x-LG.o
gcc -DPOLY_Dmax=4 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro
-Wl,-z,now -o nef-4d.x nef_4d_x-Coord.o nef_4d_x-Rat.o nef_4d_x-Vertex.o
nef_4d_x-Polynf.o nef_4d_x-nef.o nef_4d_x-E_Poly.o nef_4d_x-Nefpart.o
nef_4d_x-LG.o
gcc -DPOLY_Dmax=4 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro
-Wl,-z,now -o mori-4d.x mori_4d_x-Coord.o mori_4d_x-Rat.o mori_4d_x-Vertex.o
mori_4d_x-Polynf.o mori_4d_x-mori.o mori_4d_x-MoriCone.o
mori_4d_x-SingularInput.o mori_4d_x-LG.o
/usr/bin/ld: mori_4d_x-MoriCone.o:./Mori.h:150: multiple definition of
`nr_SR_elements'; mori_4d_x-mori.o:./Mori.h:150: first defined here
/usr/bin/ld: mori_4d_x-SingularInput.o:./Mori.h:150: multiple definition of
`nr_SR_elements'; mori_4d_x-mori.o:./Mori.h:150: first defined here
/usr/bin/ld: mori_4d_x-SingularInput.o: in function `HyperSurfSingular':
./SingularInput.c:85: warning: the use of `tmpnam' is dangerous, better use
`mkstemp'
collect2: error: ld returned 1 exit status
make[1]: *** [GNUmakefile:712: mori-4d.x] Error 1
make[1]: *** Waiting for unfinished jobs....
LG.c: In function ‘Fast_c9_VaHo’:
LG.c:617:77: warning: ‘__builtin_memset’ writing 16388 bytes into a region of
size 16384 [-Wstringop-overflow=]
617 | for(i=0;i<=N;i++) mask[i]=1<<i; for(i=0;i<=WM;i++)
woG[i]=woS[i]=woA[i]=0;
|
~~~~~~^~
LG.c:615:28: note: at offset 32768 to an object with size 49152 allocated by
‘malloc’ here
615 | wo[0] = woG = (int *) malloc(WM*3*sizeof(int));
| ^~~~~~~~~~~~~~~~~~~~~~~~
LG.c: In function ‘WIndex_HTrace’:
LG.c:657:77: warning: ‘__builtin_memset’ writing 16388 bytes into a region of
size 16384 [-Wstringop-overflow=]
657 | for(i=0;i<=N;i++) mask[i]=1<<i; for(i=0;i<=WM;i++)
woG[i]=woS[i]=woA[i]=0;
|
~~~~~~^~
LG.c:655:28: note: at offset 32768 to an object with size 49152 allocated by
‘malloc’ here
655 | wo[0] = woG = (int *) malloc(WM*3*sizeof(int));
| ^~~~~~~~~~~~~~~~~~~~~~~~
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j4 returned exit code 2
make: *** [debian/rules:6: build] Error 25
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: palp
Source-Version: 2.1-6
Done: Julien Puydt <[email protected]>
We believe that the bug you reported is fixed in the latest version of
palp, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Julien Puydt <[email protected]> (supplier of updated palp package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 08 May 2020 17:19:09 +0200
Source: palp
Architecture: source
Version: 2.1-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Julien Puydt <[email protected]>
Closes: 957661
Changes:
palp (2.1-6) unstable; urgency=medium
.
* Add patch for gcc 10 compilation. (Closes: #957661)
* Refresh packaging :
- Drop d/compat and use dh-compat 12.
- Bump std-ver to 4.5.0.
Checksums-Sha1:
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41e3160c5d54b56b75f497c13c770d232e52941e 7816 palp_2.1-6.debian.tar.xz
a675021a19814579e0f37a87b1bd36f49673e0ed 5301 palp_2.1-6_source.buildinfo
Checksums-Sha256:
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palp_2.1-6.dsc
372d530b0ed29061fe1f445cbb371fc6a8e4bcb3bb6a0a346485d9ac5a6285c7 7816
palp_2.1-6.debian.tar.xz
6890a67798bf39bafb93ca63cec40e29c8fddebaec23b99ff7d2085b10332308 5301
palp_2.1-6_source.buildinfo
Files:
d11e9ff68ff5cebd5ff6183604c331aa 1937 math optional palp_2.1-6.dsc
42f0ffdcbe9de01af6f134e7d4d4c0be 7816 math optional palp_2.1-6.debian.tar.xz
739a6d78f4a79c2255a036b26d8e85e5 5301 math optional palp_2.1-6_source.buildinfo
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--- End Message ---
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