Your message dated Fri, 19 Jun 2020 11:00:18 +0000 with message-id <[email protected]> and subject line Bug#953116: fixed in petsc 3.13.1+dfsg1-3exp1 has caused the Debian Bug report #953116, regarding libpetsc-complex3.10:amd64: The PETSc library has not been compiled with the --with-64-bit-indices option. to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 953116: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=953116 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: libpetsc-complex3.10 Version: 3.10.3+dfsg1-5 Severity: normal Tags: newcomer Dear Maintainer, *** Reporter, please consider answering these questions, where appropriate *** * What led up to the situation? Applying the library using matrix dimensions higher than 46340. * What exactly did you do (or not do) that was effective (or ineffective)? Setting the dimension to 54455 * What was the outcome of this action? Got a report that the product of the dimension is exceeding the limit, I should compile the PETSc libraries with the --with-64-bit-indices option. I assume that singed 4 Byte integers are used to describe the indices and the product of the indices. * What outcome did you expect instead? Just a normal diagonalization. Compiling the library with this option solved the situation. *** End of the template - remove these template lines *** -- System Information: Debian Release: 10.3 APT prefers stable APT policy: (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 4.19.0-8-amd64 (SMP w/32 CPU cores) Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE=en_US.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages libpetsc-complex3.10:amd64 depends on: ii libamd2 1:5.4.0+dfsg-1 ii libatlas3-base [liblapack.so.3] 3.10.3-8 ii libblas3 [libblas.so.3] 3.8.0-2 ii libc6 2.28-10 ii libcholmod3 1:5.4.0+dfsg-1 ii libfftw3-double3 3.3.8-2 ii libfftw3-mpi3 3.3.8-2 ii libgcc1 1:8.3.0-6 ii libgfortran5 8.3.0-6 ii libhdf5-openmpi-103 1.10.4+repack-10 ii libklu1 1:5.4.0+dfsg-1 ii liblapack3 [liblapack.so.3] 3.8.0-2 ii libmumps-5.1.2 5.1.2-4+b2 ii libopenblas-base [liblapack.so.3] 0.3.5+ds-3 ii libopenmpi3 3.1.3-11 ii libptscotch-6.0 6.0.6-2 ii libquadmath0 8.3.0-6 ii libscalapack-openmpi2.0 2.0.2-7+b2 ii libstdc++6 8.3.0-6 ii libsuperlu-dist6 6.1.1+dfsg1-1 ii libsuperlu5 5.2.1+dfsg1-4 ii libumfpack5 1:5.4.0+dfsg-1 libpetsc-complex3.10:amd64 recommends no packages. libpetsc-complex3.10:amd64 suggests no packages. -- no debconf information
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--- Begin Message ---Source: petsc Source-Version: 3.13.1+dfsg1-3exp1 Done: Drew Parsons <[email protected]> We believe that the bug you reported is fixed in the latest version of petsc, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Drew Parsons <[email protected]> (supplier of updated petsc package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 01 Jun 2020 19:54:28 +0800 Source: petsc Binary: libpetsc-complex-dev libpetsc-complex3.13 libpetsc-complex3.13-dbg libpetsc-complex3.13-dev libpetsc-real-dev libpetsc-real3.13 libpetsc-real3.13-dbg libpetsc-real3.13-dev libpetsc3.13-dev-common libpetsc3.13-dev-examples libpetsc64-complex-dev libpetsc64-complex3.13 libpetsc64-complex3.13-dbg libpetsc64-complex3.13-dev libpetsc64-real-dev libpetsc64-real3.13 libpetsc64-real3.13-dbg libpetsc64-real3.13-dev petsc-dev petsc3.13-doc petsc64-dev Architecture: source all amd64 Version: 3.13.1+dfsg1-3exp1 Distribution: experimental Urgency: medium Maintainer: Debian Science Maintainers <[email protected]> Changed-By: Drew Parsons <[email protected]> Description: libpetsc-complex-dev - Virtual package depending on latest PETSc development package libpetsc-complex3.13 - Shared libraries for version 3.13 of PETSc with Complex Numbers libpetsc-complex3.13-dbg - Debugging libraries for PETSc libpetsc-complex3.13-dev - Static libraries, shared links, header files for PETSc libpetsc-real-dev - Virtual package depending on latest PETSc development package libpetsc-real3.13 - Shared libraries for version 3.13 of PETSc libpetsc-real3.13-dbg - Debugging libraries for PETSc libpetsc-real3.13-dev - Static libraries, shared links, header files for PETSc libpetsc3.13-dev-common - Common header and support dev files for PETSc libpetsc3.13-dev-examples - Static libraries, shared links, header files for PETSc libpetsc64-complex-dev - Latest 64-bit PETSc development package with complex numbers libpetsc64-complex3.13 - Shared libraries for version 3.13 of 64-bit PETSc with Complex Nu libpetsc64-complex3.13-dbg - Debugging libraries for 64-bit PETSc with Complex Numbers libpetsc64-complex3.13-dev - Development files for 64-bit PETSc with complex numbers libpetsc64-real-dev - Virtual package depending on latest 64-bit PETSc development pack libpetsc64-real3.13 - Shared libraries for version 3.13 of 64-bit PETSc libpetsc64-real3.13-dbg - Debugging libraries for PETSc libpetsc64-real3.13-dev - Static libraries, shared links, header files for 64-bit PETSc petsc-dev - Virtual package depending on latest PETSc development package petsc3.13-doc - Documentation and examples for PETSc petsc64-dev - Virtual package depending on latest 64-bit PETSc development pack Closes: 953116 Changes: petsc (3.13.1+dfsg1-3exp1) experimental; urgency=medium . * Provide petsc64 packages with 64-bit builds (64 bit indexing). Closes: #953116. - cannot use SuperLU with 64 bit integers - 64-bit PETSc needs Hypre with --enable-bigint (or --enable-mixedint) which is not yet available. - Build-Depends: libmumps64-dev Checksums-Sha1: 1655c96f41ff3441686d2066db92c7ef65bdc0b7 4129 petsc_3.13.1+dfsg1-3exp1.dsc 5f8875ae58f4fc7652a963a9ba9fddd2909eb802 46144 petsc_3.13.1+dfsg1-3exp1.debian.tar.xz 4908ce8d990f75589b206457fcea49fdefbcbf77 26404 libpetsc-complex-dev_3.13.1+dfsg1-3exp1_all.deb 0376269e1ff4015a1577bc4b06a145c6baa575c9 26064624 libpetsc-complex3.13-dbg_3.13.1+dfsg1-3exp1_amd64.deb b1366d790dd85387dcfc5086bbd5f56e087fd83b 6106228 libpetsc-complex3.13-dev_3.13.1+dfsg1-3exp1_amd64.deb a6d265d2e616cfcbc8045878a63fc3bbf88a4186 5781424 libpetsc-complex3.13_3.13.1+dfsg1-3exp1_amd64.deb a36d9923e182364a034bf74a05d558d71fbe077f 26396 libpetsc-real-dev_3.13.1+dfsg1-3exp1_all.deb fd0f25268eff06a605252eddc71342bd541d1a2f 90655788 libpetsc-real3.13-dbg_3.13.1+dfsg1-3exp1_amd64.deb 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