Package: src:liggghts Version: 3.8.0+repack1-7 Severity: normal Tags: sid bookworm User: [email protected] Usertags: ftbfs-gcc-11
[This bug is not targeted to the upcoming bullseye release] Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-11/g++-11, but succeeds to build with gcc-10/g++-10. The severity of this report will be raised before the bookworm release, so nothing has to be done for the bullseye release. The full build log can be found at: http://people.debian.org/~doko/logs/20210228/filtered/gcc11/liggghts_3.8.0+repack1-7_unstable_gcc11.log The last lines of the build log are at the end of this report. To build with GCC 11, either set CC=gcc-11 CXX=g++-11 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-11/porting_to.html GCC 11 defaults to the GNU++17 standard. If your package installs header files in /usr/include, please don't work around C++17 issues by choosing a lower C++ standard for the package build, but fix these issues to build with the C++17 standard. [...] /<<PKGBUILDDIR>>/src/dihedral_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)’: /<<PKGBUILDDIR>>/src/dihedral_hybrid.cpp:352:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 352 | if (me == 0) fread(&nstyles,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/src/dihedral_hybrid.cpp:361:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 361 | if (me == 0) fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/src/dihedral_hybrid.cpp:364:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 364 | if (me == 0) fread(keywords[m],sizeof(char),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/libliggghts.dir/domain.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/domain.cpp.o -c /<<PKGBUILDDIR>>/src/domain.cpp [ 25%] Building CXX object src/CMakeFiles/libliggghts.dir/dump.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump.cpp.o -c /<<PKGBUILDDIR>>/src/dump.cpp [ 26%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_atom_vtk.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_atom_vtk.cpp.o -c /<<PKGBUILDDIR>>/src/dump_atom_vtk.cpp [ 26%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_custom.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_custom.cpp.o -c /<<PKGBUILDDIR>>/src/dump_custom.cpp [ 26%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_custom_vtk.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_custom_vtk.cpp.o -c /<<PKGBUILDDIR>>/src/dump_custom_vtk.cpp [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_custom_vtm.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_custom_vtm.cpp.o -c /<<PKGBUILDDIR>>/src/dump_custom_vtm.cpp [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_decomposition_vtk.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_decomposition_vtk.cpp.o -c /<<PKGBUILDDIR>>/src/dump_decomposition_vtk.cpp [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_euler_vtk.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_euler_vtk.cpp.o -c /<<PKGBUILDDIR>>/src/dump_euler_vtk.cpp [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_image.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_image.cpp.o -c /<<PKGBUILDDIR>>/src/dump_image.cpp [ 28%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_local.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_local.cpp.o -c /<<PKGBUILDDIR>>/src/dump_local.cpp [ 28%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_local_gran.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_local_gran.cpp.o -c /<<PKGBUILDDIR>>/src/dump_local_gran.cpp [ 28%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_local_gran_vtk.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_local_gran_vtk.cpp.o -c /<<PKGBUILDDIR>>/src/dump_local_gran_vtk.cpp [ 29%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_mesh.cpp.o -c /<<PKGBUILDDIR>>/src/dump_mesh.cpp [ 29%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh_stl.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_mesh_stl.cpp.o -c /<<PKGBUILDDIR>>/src/dump_mesh_stl.cpp [ 29%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh_vtk.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_mesh_vtk.cpp.o -c /<<PKGBUILDDIR>>/src/dump_mesh_vtk.cpp [ 30%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh_vtm.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_mesh_vtm.cpp.o -c /<<PKGBUILDDIR>>/src/dump_mesh_vtm.cpp [ 30%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_movie.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_movie.cpp.o -c /<<PKGBUILDDIR>>/src/dump_movie.cpp [ 30%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_particle.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_particle.cpp.o -c /<<PKGBUILDDIR>>/src/dump_particle.cpp [ 31%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_vtk.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_vtk.cpp.o -c /<<PKGBUILDDIR>>/src/dump_vtk.cpp [ 31%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_xyz.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/dump_xyz.cpp.o -c /<<PKGBUILDDIR>>/src/dump_xyz.cpp [ 31%] Building CXX object src/CMakeFiles/libliggghts.dir/error.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/error.cpp.o -c /<<PKGBUILDDIR>>/src/error.cpp [ 31%] Building CXX object src/CMakeFiles/libliggghts.dir/finish.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/finish.cpp.o -c /<<PKGBUILDDIR>>/src/finish.cpp [ 32%] Building CXX object src/CMakeFiles/libliggghts.dir/fix.cpp.o cd /<<PKGBUILDDIR>>/debian/build/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -pthread -fPIC -pthread -o CMakeFiles/libliggghts.dir/fix.cpp.o -c /<<PKGBUILDDIR>>/src/fix.cpp /<<PKGBUILDDIR>>/src/finish.cpp: In member function ‘void LAMMPS_NS::Finish::end(int)’: /<<PKGBUILDDIR>>/src/finish.cpp:722:40: error: ordered comparison of pointer with integer zero (‘int*’ and ‘int’) 722 | if (neighbor->lists[m]->numneigh > 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ make[3]: *** [src/CMakeFiles/libliggghts.dir/build.make:1411: src/CMakeFiles/libliggghts.dir/finish.cpp.o] Error 1 make[3]: *** Waiting for unfinished jobs.... make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build' make[2]: *** [CMakeFiles/Makefile2:147: src/CMakeFiles/libliggghts.dir/all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/debian/build' make[1]: *** [Makefile:152: all] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>/debian/build' dh_auto_build: error: cd debian/build && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make: *** [debian/rules:5: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -- debian-science-maintainers mailing list [email protected] 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