Your message dated Thu, 26 Jan 2023 16:34:50 +0000 with message-id <[email protected]> and subject line Bug#1029693: fixed in python-bumps 0.9.0-3 has caused the Debian Bug report #1029693, regarding python-bumps: tests fail with scipy 1.10 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 1029693: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1029693 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: python-bumps Version: 0.9.0-2 Severity: normal scipy 1.10 is now available in experimental. bumps fails debci tests using it. We are considering uploading scipy 1.10 to unstable in order to included it in the forthcoming stable release. If we proceed with that, then this bug will become Severity: serious. The errors are AttributeError: 'multivariate_normal_frozen' object has no attribute 'cov' A sample from the failing test log is _____________________________________ test _____________________________________ def test(): """check entropy estimates from known distributions""" # entropy test is optional: don't test if sklearn is not installed try: import sklearn except ImportError: return # Smoke test - do all the methods run in 1-D and 10-D? _check_smoke(stats.norm(10, 8)) if hasattr(stats, 'multivariate_normal'): _check_smoke(stats.multivariate_normal(cov=np.diag([1]*10))) D = stats.norm(10, 8) _check_entropy("N[100,8]", D, N=2000) _check_entropy("N[100,8]", D, N=12000) if hasattr(stats, 'multivariate_normal'): D = stats.multivariate_normal(cov=np.diag([1, 12**2, 0.2**2])) _check_entropy("MVN[1,12,0.2]", D) D = stats.multivariate_normal(cov=np.diag([1]*10)) _check_entropy("MVN[1]*10", D, N=10000) # Make sure zero-width dimensions return H = -inf D = MVNSingular(cov=np.diag([1, 1, 0])) > _check_entropy("MVN[1,1,0]", D, N=10000) /usr/lib/python3/dist-packages/bumps/dream/entropy.py:1074: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/bumps/dream/entropy.py:1010: in _check_entropy H = D.entropy()/LN2 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <bumps.dream.entropy.MVNSingular object at 0x7fda5ba23d60>, N = 10000 def entropy(self, N=10000): with np.errstate(divide='ignore'): > return 0.5*log(np.linalg.det((2*pi*np.e)*self.dist.cov)) E AttributeError: 'multivariate_normal_frozen' object has no attribute 'cov' /usr/lib/python3/dist-packages/bumps/dream/entropy.py:863: AttributeError
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--- Begin Message ---Source: python-bumps Source-Version: 0.9.0-3 Done: Drew Parsons <[email protected]> We believe that the bug you reported is fixed in the latest version of python-bumps, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Drew Parsons <[email protected]> (supplier of updated python-bumps package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 26 Jan 2023 17:07:11 +0100 Source: python-bumps Architecture: source Version: 0.9.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <[email protected]> Changed-By: Drew Parsons <[email protected]> Closes: 1029693 Changes: python-bumps (0.9.0-3) unstable; urgency=medium . * debian patch scipy_1.10.patch patches covariance handling to allow for changes in scipy 1.10 (stats.Covariance). See Upstream Issue #118. Closes: #1029693. * Standards-Version: 4.6.2 Checksums-Sha1: b7c9ed69c77e36319eef5ccf2e0ba3c6e9b11660 2649 python-bumps_0.9.0-3.dsc b5c28871d45c3359e9bc00050cc8fe02982744a0 14264 python-bumps_0.9.0-3.debian.tar.xz Checksums-Sha256: 094a3ada91a9ef480abc3bcfe876d4ded69015ef3f26fbdd676ae11c18add59e 2649 python-bumps_0.9.0-3.dsc fef5736ab605bfef9dcdec34838a67c6be32bef61735364b31b200dc9121a0cc 14264 python-bumps_0.9.0-3.debian.tar.xz Files: c350078948731f38641819f3ff25b4b9 2649 science optional python-bumps_0.9.0-3.dsc 8d5fd61b619f311b8c9fa5d5f27e26ac 14264 science optional python-bumps_0.9.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmPSp7oACgkQVz7x5L1a AfrX/Q//ZGGsjHhSjPV6upgx3jkmdHv87aJFMd4mzyzMH9s9sclA7n3adDA4sb5U 2fG5VSUO+311+SWvISh/gfuPG02jLbAju4hD6OoVhZJFc5ePKQcEbOuGvD2R9oW6 I3NERpG43uG7KtOXgnJokOSWE3PzcbE3OvaDRnGQmEcKkFsD99ojr8QyFdhwRQ7z ldaMqrQwUaHNIKYakJJxh28xQA0IUsxAXQ4/JhqGdZLDwiTyFcx2Dw/qtD4Acf+h o1hILqtKuFPeo2gFLkeW9eoGpMtrza0zujwQcfTNvGW4+QXG+KEdpJO7LBDubzt2 bZVTPuDGrtzx6fqJV/NbgwkwM6AfFYjUZcTHpWt4ZQpxEbaQh0vgv7FaqiOhScVd nOOoOPSq8IA4FwrMD6JRyuZTAXE96C5BhcrpSNIFcnXGxnfm2LfWrPSRKzmDNIzf OlPuSLubhQh1bu8yIfPOGdIheiKJnsCstaLW4+kPTmvD6jYXj53XbblvDBgOaiCT dK1D7AGmqAcqBX27Us5qAUbcUY5nj9E58PLtJhq/uF72GKGBIRnJJRrM2lylmbSt LXsHh5UfD9gWoj9JUKEVGkX2FzmvFfk8QoD3oU8lskX0I/7OkJ8iwHsUM5UIXRka X4aCKUq8go/vKAJ7+E36ebNn+GH/hpKUFJ8isXyePUnPklzFTeE= =Cz9m -----END PGP SIGNATURE-----
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