Your message dated Thu, 20 Jul 2023 21:50:21 +0000
with message-id <[email protected]>
and subject line Bug#1037622: fixed in dolfin
2019.2.0~legacy20230609.8b85e9d.ar-2
has caused the Debian Bug report #1037622,
regarding dolfin: ftbfs with GCC-13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1037622: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1037622
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:dolfin
Version: 2019.2.0~git20230116.bd54183-2
Severity: normal
Tags: sid trixie
User: [email protected]
Usertags: ftbfs-gcc-13
[This bug is targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-13/g++-13, but succeeds to build with gcc-12/g++-12. The
severity of this report will be raised before the trixie release.
The full build log can be found at:
http://qa-logs.debian.net/2023/05/22/logs/dolfin_2019.2.0~git20230116.bd54183-2_unstable_gccexp.log
The last lines of the build log are at the end of this report.
To build with GCC 13, either set CC=gcc-13 CXX=g++-13 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-13/porting_to.html
[...]
[ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/dolfin" && /usr/bin/c++
-DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI
-DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG
-Ddolfin_EXPORTS -I"/<<PKGBUILDDIR>>" -I"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu"
-isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem
/usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem
/usr/include/suitesparse -isystem /usr/include/scotch -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -isystem
/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC
-std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o -MF
CMakeFiles/dolfin.dir/mesh/Edge.cpp.o.d -o CMa
keFiles/dolfin.dir/mesh/Edge.cpp.o -c "/<<PKGBUILDDIR>>/dolfin/mesh/Edge.cpp"
[ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/dolfin" && /usr/bin/c++
-DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI
-DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG
-Ddolfin_EXPORTS -I"/<<PKGBUILDDIR>>" -I"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu"
-isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem
/usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem
/usr/include/suitesparse -isystem /usr/include/scotch -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -isystem
/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC
-std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o -MF
CMakeFiles/dolfin.dir/mesh/Face.cpp.o.d -o CMa
keFiles/dolfin.dir/mesh/Face.cpp.o -c "/<<PKGBUILDDIR>>/dolfin/mesh/Face.cpp"
[ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/dolfin" && /usr/bin/c++
-DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI
-DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG
-Ddolfin_EXPORTS -I"/<<PKGBUILDDIR>>" -I"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu"
-isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem
/usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem
/usr/include/suitesparse -isystem /usr/include/scotch -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -isystem
/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC
-std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o -MF
CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.
o.d -o CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o -c
"/<<PKGBUILDDIR>>/dolfin/mesh/FacetCell.cpp"
[ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Facet.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/dolfin" && /usr/bin/c++
-DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI
-DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG
-Ddolfin_EXPORTS -I"/<<PKGBUILDDIR>>" -I"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu"
-isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem
/usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem
/usr/include/suitesparse -isystem /usr/include/scotch -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -isystem
/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC
-std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Facet.cpp.o -MF
CMakeFiles/dolfin.dir/mesh/Facet.cpp.o.d -o C
MakeFiles/dolfin.dir/mesh/Facet.cpp.o -c
"/<<PKGBUILDDIR>>/dolfin/mesh/Facet.cpp"
[ 80%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/dolfin" && /usr/bin/c++
-DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI
-DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG
-Ddolfin_EXPORTS -I"/<<PKGBUILDDIR>>" -I"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu"
-isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem
/usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem
/usr/include/suitesparse -isystem /usr/include/scotch -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -isystem
/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC
-std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o -MF
CMakeFiles/dolfin.dir/mesh/Hexahedro
nCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o -c
"/<<PKGBUILDDIR>>/dolfin/mesh/HexahedronCell.cpp"
[ 80%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/dolfin" && /usr/bin/c++
-DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI
-DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG
-Ddolfin_EXPORTS -I"/<<PKGBUILDDIR>>" -I"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu"
-isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem
/usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem
/usr/include/suitesparse -isystem /usr/include/scotch -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -isystem
/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC
-std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -MF
CMakeFiles/dolfin.dir/mesh/IntervalCel
l.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -c
"/<<PKGBUILDDIR>>/dolfin/mesh/IntervalCell.cpp"
[ 80%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/dolfin" && /usr/bin/c++
-DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI
-DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG
-Ddolfin_EXPORTS -I"/<<PKGBUILDDIR>>" -I"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu"
-isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem
/usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem
/usr/include/suitesparse -isystem /usr/include/scotch -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -isystem
/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC
-std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -MF
CMakeFiles/dolfin.dir/mesh/LocalMeshD
ata.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -c
"/<<PKGBUILDDIR>>/dolfin/mesh/LocalMeshData.cpp"
[ 80%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/dolfin" && /usr/bin/c++
-DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI
-DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG
-Ddolfin_EXPORTS -I"/<<PKGBUILDDIR>>" -I"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu"
-isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem
/usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem
/usr/include/suitesparse -isystem /usr/include/scotch -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -isystem
/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC
-std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -MF
CMakeFiles/dolfin.dir/mesh/MeshColorin
g.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -c
"/<<PKGBUILDDIR>>/dolfin/mesh/MeshColoring.cpp"
[ 81%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/dolfin" && /usr/bin/c++
-DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI
-DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG
-Ddolfin_EXPORTS -I"/<<PKGBUILDDIR>>" -I"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu"
-isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem
/usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem
/usr/include/suitesparse -isystem /usr/include/scotch -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -isystem
/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC
-std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -MF
CMakeFiles/dolfin.dir/mesh/MeshCon
nectivity.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -c
"/<<PKGBUILDDIR>>/dolfin/mesh/MeshConnectivity.cpp"
[ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/dolfin" && /usr/bin/c++
-DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI
-DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG
-Ddolfin_EXPORTS -I"/<<PKGBUILDDIR>>" -I"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu"
-isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem
/usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem
/usr/include/suitesparse -isystem /usr/include/scotch -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -isystem
/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC
-std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o -MF
CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o.d -o CMa
keFiles/dolfin.dir/mesh/Mesh.cpp.o -c "/<<PKGBUILDDIR>>/dolfin/mesh/Mesh.cpp"
[ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/dolfin" && /usr/bin/c++
-DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI
-DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG
-Ddolfin_EXPORTS -I"/<<PKGBUILDDIR>>" -I"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu"
-isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem
/usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem
/usr/include/suitesparse -isystem /usr/include/scotch -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -isystem
/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -g -DNDEBUG -fPIC
-std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -MF
CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o.
d -o CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -c
"/<<PKGBUILDDIR>>/dolfin/mesh/MeshData.cpp"
In file included from /<<PKGBUILDDIR>>/dolfin/mesh/MeshConnectivity.cpp:26:
/<<PKGBUILDDIR>>/dolfin/mesh/MeshConnectivity.h: In member function ‘void
dolfin::MeshConnectivity::set(const T&)’:
/<<PKGBUILDDIR>>/dolfin/mesh/MeshConnectivity.h:135:12: error: ‘int32_t’ is not
a member of ‘std’
135 | std::int32_t size = 0;
| ^~~~~~~
/<<PKGBUILDDIR>>/dolfin/mesh/MeshConnectivity.h:135:12: note: suggested
alternatives:
In file included from /usr/include/x86_64-linux-gnu/sys/types.h:155,
from /usr/include/stdlib.h:395,
from /usr/include/c++/13/cstdlib:79,
from /usr/include/c++/13/ext/string_conversions.h:43,
from /usr/include/c++/13/bits/basic_string.h:4097,
from /usr/include/c++/13/string:54,
from /usr/include/c++/13/bits/locale_classes.h:40,
from /usr/include/c++/13/bits/ios_base.h:41,
from /usr/include/c++/13/ios:44,
from /usr/include/c++/13/istream:40,
from /usr/include/c++/13/sstream:40,
from /<<PKGBUILDDIR>>/dolfin/mesh/MeshConnectivity.cpp:23:
/usr/include/x86_64-linux-gnu/bits/stdint-intn.h:26:19: note: ‘int32_t’
26 | typedef __int32_t int32_t;
| ^~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdint-intn.h:26:19: note: ‘int32_t’
/<<PKGBUILDDIR>>/dolfin/mesh/MeshConnectivity.h:144:28: error: cannot convert
‘<unresolved overloaded function type>’ to ‘std::vector<unsigned
int>::size_type’ {aka ‘long unsigned int’}
144 | _connections.reserve(size);
| ^~~~
| |
| <unresolved overloaded function type>
In file included from /usr/include/c++/13/vector:72,
from /usr/include/boost/detail/container_fwd.hpp:93,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:761,
from /usr/include/boost/functional/hash.hpp:6,
from /<<PKGBUILDDIR>>/dolfin/mesh/MeshConnectivity.cpp:24:
/usr/include/c++/13/bits/vector.tcc:68:23: note: initializing argument 1 of
‘void std::vector<_Tp, _Alloc>::reserve(size_type) [with _Tp = unsigned int;
_Alloc = std::allocator<unsigned int>; size_type = long unsigned int]’
68 | reserve(size_type __n)
| ~~~~~~~~~~^~~
make[4]: *** [dolfin/CMakeFiles/dolfin.dir/build.make:2669:
dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o] Error 1
make[4]: *** Waiting for unfinished jobs....
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[3]: *** [CMakeFiles/Makefile2:1498: dolfin/CMakeFiles/dolfin.dir/all]
Error 2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[2]: *** [Makefile:149: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j8 "INSTALL=install
--strip-program=true" VERBOSE=1 returned exit code 2
make[1]: *** [debian/rules:227: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:211: build] Error 2
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: dolfin
Source-Version: 2019.2.0~legacy20230609.8b85e9d.ar-2
Done: Drew Parsons <[email protected]>
We believe that the bug you reported is fixed in the latest version of
dolfin, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <[email protected]> (supplier of updated dolfin package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 20 Jul 2023 19:58:06 +0200
Source: dolfin
Architecture: source
Version: 2019.2.0~legacy20230609.8b85e9d.ar-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
<[email protected]>
Changed-By: Drew Parsons <[email protected]>
Closes: 1037622
Changes:
dolfin (2019.2.0~legacy20230609.8b85e9d.ar-2) unstable; urgency=medium
.
* debian patch gcc13.patch enables build with gcc-13
- apply dolfinx PR#2646 to use int instead of std::int32_t
in timing.h
- elsewhere #include <cstdint> to define std::int32_t
- Closes: #1037622
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