Your message dated Sun, 29 Oct 2023 14:09:21 +0100
with message-id <[email protected]>
and subject line Re: Bug#1013560: trilinos: FTBFS: src.cxx:6:3: error: ‘isnan’
was not declared in this scope; did you mean ‘std::isnan’?
has caused the Debian Bug report #1013560,
regarding trilinos: FTBFS: src.cxx:6:3: error: ‘isnan’ was not declared in this
scope; did you mean ‘std::isnan’?
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1013560: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1013560
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: trilinos
Version: 13.2.0-1
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: [email protected]
Usertags: ftbfs-20220624 ftbfs-bookworm
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
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>
>
>
> Determining if the include file time.h exists passed with the following
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> Change Dir: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp
>
> Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_25d48/fast && gmake[2]:
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> '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp'
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>
>
> Determining if the include file stdint.h exists passed with the following
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> Change Dir: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp
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> Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_75dbe/fast && gmake[2]:
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> '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp'
> gmake[2]: Leaving directory
> '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp'
>
>
>
> Determining if the include file inttypes.h exists passed with the following
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> Change Dir: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp
>
> Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_6290b/fast && gmake[2]:
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>
>
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> Verifying Fortran/CXX Compiler Compatibility passed with the following output:
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> Run Build Command(s):/usr/bin/gmake -f Makefile VerifyFortranC && gmake[2]:
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> gmake[5]: Entering directory
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> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/FortranCInterface/VerifyCXX/CMakeFiles/VerifyFortran.dir/DependInfo.cmake
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> [ 33%] Built target VerifyFortran
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> In file included from
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> int main()
> {
> double x = 1.0;
> isinf(x);
> return 0;
> }
>
> dh_auto_configure: error: cd obj-x86_64-linux-gnu && cmake
> -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None
> -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
> -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF
> -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
> -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles"
> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu
> -DCMAKE_C_COMPILER=mpicc -DCMAKE_CXX_COMPILER=mpicxx
> -DCMAKE_Fortran_COMPILER=mpif90 -DBUILD_SHARED_LIBS:BOOL=ON
> -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON
> -DTrilinos_LIBRARY_NAME_PREFIX:STRING=trilinos_
> -DTrilinos_INSTALL_INCLUDE_DIR:PATH=include/trilinos/
> -DTrilinos_INSTALL_TriBITS:BOOL=OFF -DTrilinos_USE_GNUINSTALLDIRS:BOOL=ON
> -DTrilinos_ENABLE_DEVELOPMENT_MODE:BOOL=OFF
> -DTrilinos_ASSERT_MISSING_PACKAGES:BOOL=OFF
> -DTrilinos_ENABLE_EXPLICIT_INSTANTIATION:BOOL=ON
> -DTrilinos_ENABLE_EXPORT_MAKEFILES:BOOL=OFF
> -DTrilinos_ENABLE_EXAMPLES:BOOL=OFF -DTrilinos_ENABLE_TESTS:BOOL=ON
> -DTrilinos_ENABLE_Amesos:BOOL=ON -DTrilinos_ENABLE_Amesos2:BOOL=ON
> -DAmesos2_ENABLE_TESTS:BOOL=OFF -DTrilinos_ENABLE_Anasazi:BOOL=ON
> -DAnasazi_ENABLE_TESTS:BOOL=OFF -DTrilinos_ENABLE_AztecOO:BOOL=ON
> -DTrilinos_ENABLE_Belos:BOOL=ON -DBelos_ENABLE_TESTS:BOOL=OFF
> -DTrilinos_ENABLE_Epetra:BOOL=ON -DEpetra_ENABLE_TESTS:BOOL=OFF
> -DTrilinos_ENABLE_EpetraExt:BOOL=ON -DTrilinos_ENABLE_Galeri:BOOL=ON
> -DTrilinos_ENABLE_GlobiPack:BOOL=ON -DTrilinos_ENABLE_Ifpack:BOOL=ON
> -DIfpack_ENABLE_TESTS:BOOL=OFF -DTrilinos_ENABLE_Ifpack2:BOOL=ON
> -DTrilinos_ENABLE_Intrepid:BOOL=ON -DTrilinos_ENABLE_Intrepid2:BOOL=ON
> -DTrilinos_ENABLE_Isorropia:BOOL=ON -DTrilinos_ENABLE_Kokkos:BOOL=ON
> -DKokkosCore_ENABLE_TESTS:BOOL=OFF -DKokkos_ENABLE_TESTS:BOOL=OFF
> -DTrilinos_ENABLE_KokkosKernels:BOOL=ON -DKokkosKernels_ENABLE_TESTS:BOOL=OFF
> -DTrilinos_ENABLE_Komplex:BOOL=ON -DTrilinos_ENABLE_ML:BOOL=ON
> -DTrilinos_ENABLE_Moertel:BOOL=ON -DTrilinos_ENABLE_MueLu:BOOL=ON
> -DMueLu_ENABLE_TESTS:BOOL=OFF -DTrilinos_ENABLE_NOX:BOOL=ON
> -DNOX_ENABLE_TESTS:BOOL=OFF -DTrilinos_ENABLE_OptiPack:BOOL=ON
> -DTrilinos_ENABLE_Pamgen:BOOL=ON -DTrilinos_ENABLE_Phalanx:BOOL=ON
> -DTrilinos_ENABLE_Pike:BOOL=ON -DTrilinos_ENABLE_Piro:BOOL=ON
> -DPiro_ENABLE_TESTS:BOOL=OFF -DTrilinos_ENABLE_Pliris:BOOL=ON
> -DTrilinos_ENABLE_ROL:BOOL=ON -DTrilinos_ENABLE_RTOp:BOOL=ON
> -DTrilinos_ENABLE_Rythmos:BOOL=ON -DTrilinos_ENABLE_Sacado:BOOL=ON
> -DTrilinos_ENABLE_Shards:BOOL=ON -DTrilinos_ENABLE_ShyLU:BOOL=ON
> -DTrilinos_ENABLE_Stokhos:BOOL=ON -DTrilinos_ENABLE_Stratimikos:BOOL=ON
> -DStratimikos_ENABLE_TESTS:BOOL=OFF -DTrilinos_ENABLE_Teko:BOOL=ON
> -DTrilinos_ENABLE_Teuchos:BOOL=ON -DTeuchos_ENABLE_TESTS:BOOL=OFF
> -DTeuchosComm_ENABLE_TESTS:BOOL=OFF -DTeuchosCore_ENABLE_TESTS:BOOL=OFF
> -DTrilinos_ENABLE_Thyra:BOOL=ON -DTrilinos_ENABLE_Tpetra:BOOL=ON
> -DTrilinos_ENABLE_TrilinosCouplings:BOOL=ON
> -DTrilinos_ENABLE_Triutils:BOOL=ON -DTrilinos_ENABLE_Xpetra:BOOL=ON
> -DXpetra_ENABLE_TESTS:BOOL=OFF -DTrilinos_ENABLE_Zoltan:BOOL=ON
> -DZoltan_ENABLE_TESTS:BOOL=OFF -DTrilinos_ENABLE_Zoltan2:BOOL=ON
> -DZoltan2_ENABLE_TESTS:BOOL=OFF -DTrilinos_ENABLE_Gtest:BOOL=OFF
> -DTrilinos_ENABLE_MiniTensor:BOOL=OFF -DTrilinos_ENABLE_MOOCHO:BOOL=OFF
> -DTrilinos_ENABLE_SEACAS:BOOL=OFF -DTrilinos_ENABLE_STK:BOOL=OFF
> -DTrilinos_ENABLE_Tempus:BOOL=OFF -DTPL_ENABLE_BinUtils:BOOL=OFF
> -DTPL_ENABLE_Boost:BOOL=ON -DTPL_ENABLE_HDF5:BOOL=ON
> -DHDF5_INCLUDE_DIRS:PATH=/usr/include/hdf5/openmpi/
> -DHDF5_LIBRARY_DIRS:PATH=/usr/lib/x86_64-linux-gnu/hdf5/openmpi/
> -DTPL_ENABLE_Matio:BOOL=OFF -DTPL_ENABLE_MATLAB:BOOL=OFF
> -DTPL_ENABLE_MPI:BOOL=ON -DTPL_ENABLE_MUMPS:BOOL=ON
> -DTPL_ENABLE_Netcdf:BOOL=OFF -DTPL_ENABLE_ParMETIS:BOOL=OFF
> -DTPL_ENABLE_Scotch:BOOL=ON -DScotch_INCLUDE_DIRS:PATH=/usr/include/scotch/
> -DTPL_ENABLE_SuperLU:BOOL=OFF -DTPL_ENABLE_TBB:BOOL=ON
> -DTPL_ENABLE_X11:BOOL=OFF -DTPL_ENABLE_Zlib:BOOL=ON .. returned exit code 1
> make[1]: *** [debian/rules:96: configure-stamp] Error 25
The full build log is available from:
http://qa-logs.debian.net/2022/06/24/trilinos_13.2.0-1_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220624;[email protected]
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220624&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Hi,
I cannot reproduce this anymore. Closing.
Lucas
--- End Message ---
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