Your message dated Mon, 18 Dec 2023 17:10:21 +0000
with message-id <[email protected]>
and subject line Bug#1046864: fixed in hypre 2.28.0-8
has caused the Debian Bug report #1046864,
regarding hypre: Fails to build source after successful build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1046864: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1046864
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: hypre
Version: 2.28.0-6
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -S
> ------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package hypre
> dpkg-buildpackage: info: source version 2.28.0-6
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Drew Parsons <[email protected]>
> dpkg-source --before-build .
> fakeroot debian/rules clean
> dh clean --sourcedirectory=src
> debian/rules override_dh_auto_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> echo "Running clean"
> Running clean
> rm -rf /<<PKGBUILDDIR>>/debian/tmp
> rm -f src/configure.in
> rm -f src/config.log
> rm -f src/config/config.guess
> rm -f src/config/config.sub
> cd src/test; \
> for TEST in TEST_*; do \
> rm -f ${TEST}.stdout ${TEST}.stderr; \
> done
> dh_auto_clean
> cd src && make -j8 distclean
> make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
> Dist-Cleaning blas ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/blas'
> rm -rf *.o
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/blas'
> Dist-Cleaning lapack ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/lapack'
> rm -rf *.o
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/lapack'
> Dist-Cleaning utilities ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/utilities'
> rm -f *.o *.obj libHYPRE*
> rm -rf pchdir tca.map *inslog*
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/utilities'
> Dist-Cleaning multivector ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/multivector'
> rm -f *.o libHYPRE*
> rm -rf pchdir tca.map *inslog*
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/multivector'
> Dist-Cleaning krylov ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/krylov'
> rm -f *.o libHYPRE*
> rm -rf pchdir tca.map *inslog*
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/krylov'
> Dist-Cleaning seq_mv ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/seq_mv'
> rm -f csr_spgemm_device_numer[1-9].c
> rm -f csr_spgemm_device_numer10.c
> rm -f csr_spgemm_device_symbl[1-9].c
> rm -f csr_spgemm_device_symbl10.c
> rm -f *.o *.obj libHYPRE*
> rm -rf pchdir tca.map *inslog*
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/seq_mv'
> Dist-Cleaning parcsr_mv ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/parcsr_mv'
> rm -f *.o *.obj libHYPRE*
> rm -f driver driver_matvec driver_matmul
> rm -rf pchdir tca.map *inslog*
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/parcsr_mv'
> Dist-Cleaning parcsr_block_mv ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/parcsr_block_mv'
> rm -rf *.o libHYPRE_*
> rm -f driver driver_matvec driver_matmul
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/parcsr_block_mv'
> Dist-Cleaning distributed_matrix ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/distributed_matrix'
> rm -f *.o libHYPRE*
> rm -rf pchdir tca.map *inslog*
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/distributed_matrix'
> Dist-Cleaning IJ_mv ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/IJ_mv'
> rm -f *.o *.obj libHYPRE*
> rm -rf pchdir tca.map *inslog*
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/IJ_mv'
> Dist-Cleaning matrix_matrix ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/matrix_matrix'
> rm -f *.o lib*
> rm -rf pchdir tca.map *inslog*
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/matrix_matrix'
> Dist-Cleaning parcsr_ls ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/parcsr_ls'
> rm -f *.o *.obj libHYPRE*
> rm -rf pchdir tca.map *inslog*
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/parcsr_ls'
> Dist-Cleaning struct_mv ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/struct_mv'
> rm -f *.o *.obj libHYPRE*
> rm -rf pchdir tca.map *inslog*
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/struct_mv'
> Dist-Cleaning struct_ls ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/struct_ls'
> rm -f *.o *.obj libHYPRE*
> rm -rf pchdir tca.map *inslog*
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/struct_ls'
> Dist-Cleaning sstruct_mv ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/sstruct_mv'
> rm -f *.o *.obj libHYPRE*
> rm -rf pchdir tca.map *inslog*
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/sstruct_mv'
> Dist-Cleaning sstruct_ls ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/sstruct_ls'
> rm -f *.o *.obj libHYPRE*
> rm -rf pchdir tca.map *inslog*
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/sstruct_ls'
> Dist-Cleaning /<<PKGBUILDDIR>>/src/distributed_ls ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/distributed_ls'
> make[4]: Entering directory '/<<PKGBUILDDIR>>/src/distributed_ls/pilut'
> rm -f *.o libHYPRE*
> rm -rf pchdir tca.map *inslog*
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/distributed_ls/pilut'
> make[4]: Entering directory '/<<PKGBUILDDIR>>/src/distributed_ls/ParaSails'
> rm -f *.o libHYPRE*
> rm -rf pchdir tca.map *inslog*
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/distributed_ls/ParaSails'
> make[4]: Entering directory '/<<PKGBUILDDIR>>/src/distributed_ls/Euclid'
> rm -f *.o libHYPRE*
> rm -rf pchdir tca.map *inslog*
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/distributed_ls/Euclid'
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/distributed_ls'
> Dist-Cleaning lib ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/lib'
> rm -f *.o libHYPRE*
> rm -rf pchdir tca.map *inslog*
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/lib'
> Dist-Cleaning docs ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/docs'
> make[4]: Entering directory '/<<PKGBUILDDIR>>/src/docs/usr-manual'
> make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make
> rule.
> rm -rf _build/*
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/docs/usr-manual'
> make[4]: Entering directory '/<<PKGBUILDDIR>>/src/docs/ref-manual'
> make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make
> rule.
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/docs/ref-manual'
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/docs'
> Dist-Cleaning test ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/test'
> rm -f *.o *.obj *.csv
> rm -rf pchdir tca.map *inslog*
> rm -f ij ij_assembly sstruct struct ams_driver maxwell_unscaled
> struct_migrate sstruct_fac ij_mv ij_mm zboxloop
> rm -f ex1_for ex3_for ex5_for ex6_for ex7_for
> rm -f f77_ij f77_ij_mv f77_struct
> rm -f cxx_ij cxx_sstruct cxx_struct cxx_*
> rm -f TEST_examples/*.out*
> rm -f TEST_examples/*.err*
> rm -f TEST_fac/*.out*
> rm -f TEST_fac/*.err*
> rm -f TEST_ij/*.out*
> rm -f TEST_ij/*.err*
> rm -f TEST_ij/*.txt*
> rm -f TEST_ij/vectors.*
> rm -f TEST_sstruct/*.out*
> rm -f TEST_sstruct/*.err*
> rm -f TEST_struct/*.out*
> rm -f TEST_struct/*.err*
> rm -f ex1 ex2 ex3 ex4 ex5 ex5big ex5b ex5b77 ex6 ex7 ex8 ex9 ex15big ex18comp
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/test'
> Dist-Cleaning examples ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/examples'
> rm -f ex1.o ex2.o ex3.o ex4.o ex5.o ex5f.o ex6.o ex7.o ex8.o ex9.o ex11.o
> ex12.o ex12f.o ex13.o ex14.o ex15.o ex16.o
> rm -f ex5big.o ex15big.o
> rm -f ex5f.o ex12f.o
> rm -f ex17.o ex18.o
> rm -f ex18comp.o
> rm -f cudaf.o cudaf.mod ex*.o
> cd vis; make clean
> make[4]: Entering directory '/<<PKGBUILDDIR>>/src/examples/vis'
> make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make
> rule.
> rm -f *mesh* *sol* *data*
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/examples/vis'
> rm -f ex1 ex2 ex3 ex4 ex5 ex5f ex6 ex7 ex8 ex9 ex11 ex12 ex12f ex13 ex14 ex15
> ex16 ex1*~ ex2*~ ex3*~ ex4*~ ex5*~ ex5f*~ ex6*~ ex7*~ ex8*~ ex9*~ ex11*~
> ex12*~ ex12f*~ ex13*~ ex14*~ ex15*~ ex16*~
> rm -f ex5big ex15big ex5big*~ ex15big*~
> rm -f ex5f*~ ex12f*~
> rm -f ex17 ex18 ex17*~ ex18*~
> rm -f ex18comp ex18comp*~
> rm -fr README*
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/examples'
> Dist-Cleaning examples/docs ...
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src/examples/docs'
> rm -f *.html
> rm -f *~
> rm -rf ../*.html ../README_files
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/examples/docs'
> rm -rf tca.map pchdir *inslog*
> rm -rf ./config/Makefile.config
> rm -rf ./TAGS
> rm -rf ./autom4te.cache
> rm -rf ./config.log
> rm -rf ./config.status
> rm -rf ./HYPRE_config.h
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_autoreconf_clean -O--sourcedirectory=src
> debian/rules override_dh_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_clean
> rm -rf src64 src64m
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building hypre using existing ./hypre_2.28.0.orig.tar.gz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: warning: ignoring deletion of file src/config/config.sub, use
> --include-removal to override
> dpkg-source: warning: ignoring deletion of file src/config/config.guess, use
> --include-removal to override
> dpkg-source: error: cannot represent change to
> src-static/IJ_mv/F90_HYPRE_IJMatrix.o: binary file contents changed
> dpkg-source: error: add src-static/IJ_mv/F90_HYPRE_IJMatrix.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src-static/IJ_mv/F90_HYPRE_IJVector.o: binary file contents changed
> dpkg-source: error: add src-static/IJ_mv/F90_HYPRE_IJVector.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src-static/IJ_mv/F90_IJMatrix.o: binary file contents changed
> dpkg-source: error: add src-static/IJ_mv/F90_IJMatrix.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src-static/IJ_mv/HYPRE_IJMatrix.o: binary file contents changed
> dpkg-source: error: add src-static/IJ_mv/HYPRE_IJMatrix.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src-static/IJ_mv/HYPRE_IJVector.o: binary file contents changed
> dpkg-source: error: add src-static/IJ_mv/HYPRE_IJVector.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to src-static/IJ_mv/IJMatrix.o:
> binary file contents changed
> dpkg-source: error: add src-static/IJ_mv/IJMatrix.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src-static/IJ_mv/IJMatrix_parcsr.o: binary file contents changed
> dpkg-source: error: add src-static/IJ_mv/IJMatrix_parcsr.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src-static/IJ_mv/IJMatrix_parcsr_device.obj: binary file contents changed
> dpkg-source: error: add src-static/IJ_mv/IJMatrix_parcsr_device.obj in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to src-static/IJ_mv/IJVector.o:
> binary file contents changed
> dpkg-source: error: add src-static/IJ_mv/IJVector.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src-static/IJ_mv/IJVector_parcsr.o: binary file contents changed
> dpkg-source: error: add src-static/IJ_mv/IJVector_parcsr.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src-static/IJ_mv/IJVector_parcsr_device.obj: binary file contents changed
> dpkg-source: error: add src-static/IJ_mv/IJVector_parcsr_device.obj in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src-static/IJ_mv/IJ_assumed_part.o: binary file contents changed
> dpkg-source: error: add src-static/IJ_mv/IJ_assumed_part.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src-static/IJ_mv/aux_par_vector.o: binary file contents changed
> dpkg-source: error: add src-static/IJ_mv/aux_par_vector.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src-static/IJ_mv/aux_parcsr_matrix.o: binary file contents changed
[...]
> dpkg-source: error: add src64m-static/utilities/qsort.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src64m-static/utilities/qsplit.o: binary file contents changed
> dpkg-source: error: add src64m-static/utilities/qsplit.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src64m-static/utilities/random.o: binary file contents changed
> dpkg-source: error: add src64m-static/utilities/random.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src64m-static/utilities/threading.o: binary file contents changed
> dpkg-source: error: add src64m-static/utilities/threading.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src64m-static/utilities/timer.o: binary file contents changed
> dpkg-source: error: add src64m-static/utilities/timer.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src64m-static/utilities/timing.o: binary file contents changed
> dpkg-source: error: add src64m-static/utilities/timing.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> src64m-static/utilities/utilities.o: binary file contents changed
> dpkg-source: error: add src64m-static/utilities/utilities.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: warning: executable mode 0755 of
> 'src64m-static/utilities/version.sh' will not be represented in diff
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/hypre_2.28.0-6_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: hypre
Source-Version: 2.28.0-8
Done: Drew Parsons <[email protected]>
We believe that the bug you reported is fixed in the latest version of
hypre, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <[email protected]> (supplier of updated hypre package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 18 Dec 2023 17:01:24 +0100
Source: hypre
Architecture: source
Version: 2.28.0-8
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Drew Parsons <[email protected]>
Closes: 1046864 1058461
Changes:
hypre (2.28.0-8) unstable; urgency=medium
.
* Team upload.
* debian/rules: add loong64 to list of arches needing a relaxed
test tolerance for build-time tests. Closes: #1058461.
* after dh_clean remove src*-static copies of the src dir.
Closes: #1046864
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--- End Message ---
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