Your message dated Sun, 07 Apr 2024 15:37:50 +0000
with message-id <[email protected]>
and subject line Bug#1065120: fixed in pytables 3.9.2-2
has caused the Debian Bug report #1065120,
regarding python3-tables: includes Python package dependency on blosc2 in
metadata
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1065120: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1065120
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: python3-tables
Version: 3.9.2-1
Severity: normal
X-Debbugs-Cc: none, [email protected], David M. Cooke
<[email protected]>
Dear Maintainer,
While attempting to run vitables, I get the following traceback:
Traceback (most recent call last):
File "/usr/bin/vitables", line 33, in <module>
sys.exit(load_entry_point('ViTables==3.0.2', 'gui_scripts',
'vitables-run')())
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/bin/vitables", line 25, in importlib_load_entry_point
return next(matches).load()
^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/importlib/metadata/__init__.py", line 202, in load
module = import_module(match.group('module'))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/importlib/__init__.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1204, in _gcd_import
File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
File "<frozen importlib._bootstrap>", line 1147, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 690, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 940, in exec_module
File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
File "/usr/share/vitables/vitables/start.py", line 31, in <module>
from vitables.vtapp import VTApp
File "/usr/share/vitables/vitables/vtapp.py", line 43, in <module>
import vitables.preferences.pluginsloader as pluginsloader
File "/usr/share/vitables/vitables/preferences/pluginsloader.py", line 26, in
<module>
import pkg_resources
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3327,
in <module>
@_call_aside
^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3302,
in _call_aside
f(*args, **kwargs)
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3340,
in _initialize_master_working_set
working_set = WorkingSet._build_master()
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 631, in
_build_master
ws.require(__requires__)
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 968, in
require
needed = self.resolve(parse_requirements(requirements))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 829, in
resolve
dist = self._resolve_dist(
^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 870, in
_resolve_dist
raise DistributionNotFound(req, requirers)
pkg_resources.DistributionNotFound: The 'blosc2>=2.3.0' distribution was not
found and is required by tables
(Reported as Bug#1065117)
Ultimately, I believe the problem to be that
/usr/lib/python3/dist-packages/tables-3.9.2.dist-info/METADATA
includes a line 'Requires-Dist: blosc2 >=2.3.0' (unless that information
is somewhere elso also; I couldn't find it elsewhere). However, the
blosc2 Python package isn't installed (nor, for that matter, packaged
for Debian). When vitables starts to look for plugins, the
pkg_resources module attempts to resolve vitables' Python dependencies.
>From what I can tell, the Python bindings in the blosc2 package aren't
used, and it's only listed for the blosc2 library and headers it
includes -- python3-tables is built against the libblosc2-2 Debian
package instead.
I think removing the offending line from METADATA should be a
sufficient fix.
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 6.6.15-amd64 (SMP w/8 CPU threads; PREEMPT)
Locale: LANG=en_CA.UTF-8, LC_CTYPE=en_CA.UTF-8 (charmap=UTF-8),
LANGUAGE=en_GB:en_US
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages python3-tables depends on:
ii python-tables-data 3.9.2-1
ii python3 3.11.6-1
ii python3-cpuinfo 9.0.0-1
ii python3-numexpr 2.9.0-1
ii python3-numpy 1:1.24.2-2
ii python3-packaging 23.2-1
ii python3-tables-lib 3.9.2-1
python3-tables recommends no packages.
Versions of packages python3-tables suggests:
pn python-tables-doc <none>
ii python3-netcdf4 1.6.5-1+b1
ii vitables 3.0.2-4
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: pytables
Source-Version: 3.9.2-2
Done: Antonio Valentino <[email protected]>
We believe that the bug you reported is fixed in the latest version of
pytables, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Antonio Valentino <[email protected]> (supplier of updated pytables
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 07 Apr 2024 06:58:48 +0000
Source: pytables
Architecture: source
Version: 3.9.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Antonio Valentino <[email protected]>
Closes: 1065120
Changes:
pytables (3.9.2-2) unstable; urgency=medium
.
* debian/patches:
- New 0005-No-python-blosc2.patch (Closes: #1065120).
* Update dates in d/copyright.
* Set upstream metadata fields: Security-Contact.
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