Your message dated Thu, 19 Sep 2024 18:00:15 +0000
with message-id <[email protected]>
and subject line Bug#1075547: fixed in sundials 7.1.1+dfsg1-1exp1
has caused the Debian Bug report #1075547,
regarding sundials: ftbfs with GCC-14
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1075547: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1075547
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:sundials
Version: 6.4.1+dfsg1-3
Severity: important
Tags: sid trixie
User: [email protected]
Usertags: ftbfs-gcc-14
[This bug is targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-14/g++-14, but succeeds to build with gcc-13/g++-13. The
severity of this report will be raised before the trixie release.
The full build log can be found at:
http://qa-logs.debian.net/2024/07/01/sundials_6.4.1+dfsg1-3_unstable_gccexp.log
The last lines of the build log are at the end of this report.
To build with GCC 14, either set CC=gcc-14 CXX=g++-14 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-14/porting_to.html
[...]
make -f examples/sunmatrix/band/CMakeFiles/test_sunmatrix_band.dir/build.make
examples/sunmatrix/band/CMakeFiles/test_sunmatrix_band.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/debian/build'
[ 13%] Building Fortran object
src/sundials/fmod/CMakeFiles/sundials_fgeneric_mod_obj_shared.dir/fsundials_nonlinearsolver_mod.f90.o
cd /<<PKGBUILDDIR>>/debian/build/src/sundials/fmod && /usr/bin/gfortran
-Dsundials_generic_EXPORTS
-I/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include
-I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/debian/build/include
-I/<<PKGBUILDDIR>>/src/sundials -I/<<PKGBUILDDIR>>/debian/build/fortran_SHARED
-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -fcf-protection -J../../../fortran_SHARED -fPIC -cpp
-c /<<PKGBUILDDIR>>/src/sundials/fmod/fsundials_nonlinearsolver_mod.f90 -o
CMakeFiles/sundials_fgeneric_mod_obj_shared.dir/fsundials_nonlinearsolver_mod.f90.o
[ 13%] Building C object
examples/sunmatrix/band/CMakeFiles/test_sunmatrix_band.dir/test_sunmatrix_band.c.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
cd /<<PKGBUILDDIR>>/debian/build/examples/sunmatrix/band && /usr/bin/cc
-I/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include
-I/<<PKGBUILDDIR>>/examples/sunmatrix/band/.
-I/<<PKGBUILDDIR>>/examples/sunmatrix/band/.. -I/<<PKGBUILDDIR>>/include
-I/<<PKGBUILDDIR>>/debian/build/include -I/<<PKGBUILDDIR>>/src/sundials
-fcommon -std=gnu99 -MD -MT
examples/sunmatrix/band/CMakeFiles/test_sunmatrix_band.dir/test_sunmatrix_band.c.o
-MF CMakeFiles/test_sunmatrix_band.dir/test_sunmatrix_band.c.o.d -o
CMakeFiles/test_sunmatrix_band.dir/test_sunmatrix_band.c.o -c
/<<PKGBUILDDIR>>/examples/sunmatrix/band/test_sunmatrix_band.c
/<<PKGBUILDDIR>>/src/sunnonlinsol/petscsnes/sunnonlinsol_petscsnes.c: In
function ‘SUNNonlinSolGetNumIters_PetscSNES’:
/<<PKGBUILDDIR>>/src/sunnonlinsol/petscsnes/sunnonlinsol_petscsnes.c:326:54:
error: passing argument 2 of ‘SNESGetIterationNumber’ from incompatible pointer
type [-Wincompatible-pointer-types]
326 | ierr = SNESGetIterationNumber(SUNNLS_SNESOBJ(NLS), &niters);
| ^~~~~~~
| |
| sunindextype *
{aka long int *}
In file included from
/<<PKGBUILDDIR>>/src/sunnonlinsol/petscsnes/sunnonlinsol_petscsnes.c:22:
/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include/petscsnes.h:152:58:
note: expected ‘PetscInt *’ {aka ‘int *’} but argument is of type ‘sunindextype
*’ {aka ‘long int *’}
152 | PETSC_EXTERN PetscErrorCode SNESGetIterationNumber(SNES, PetscInt *);
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/sunnonlinsol/petscsnes/sunnonlinsol_petscsnes.c: In
function ‘SUNNonlinSolGetNumIters_PetscSNES’:
/<<PKGBUILDDIR>>/src/sunnonlinsol/petscsnes/sunnonlinsol_petscsnes.c:326:54:
error: passing argument 2 of ‘SNESGetIterationNumber’ from incompatible pointer
type [-Wincompatible-pointer-types]
326 | ierr = SNESGetIterationNumber(SUNNLS_SNESOBJ(NLS), &niters);
| ^~~~~~~
| |
| sunindextype *
{aka long int *}
In file included from
/<<PKGBUILDDIR>>/src/sunnonlinsol/petscsnes/sunnonlinsol_petscsnes.c:22:
/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include/petscsnes.h:152:58:
note: expected ‘PetscInt *’ {aka ‘int *’} but argument is of type ‘sunindextype
*’ {aka ‘long int *’}
152 | PETSC_EXTERN PetscErrorCode SNESGetIterationNumber(SNES, PetscInt *);
| ^~~~~~~~~~
make[3]: ***
[src/sunnonlinsol/petscsnes/CMakeFiles/sundials_sunnonlinsolpetscsnes_obj_static.dir/build.make:79:
src/sunnonlinsol/petscsnes/CMakeFiles/sundials_sunnonlinsolpetscsnes_obj_static.dir/sunnonlinsol_petscsnes.c.o]
Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
make[2]: *** [CMakeFiles/Makefile2:8900:
src/sunnonlinsol/petscsnes/CMakeFiles/sundials_sunnonlinsolpetscsnes_obj_static.dir/all]
Error 2
make[2]: *** Waiting for unfinished jobs....
make[3]: ***
[src/sunnonlinsol/petscsnes/CMakeFiles/sundials_sunnonlinsolpetscsnes_obj_shared.dir/build.make:79:
src/sunnonlinsol/petscsnes/CMakeFiles/sundials_sunnonlinsolpetscsnes_obj_shared.dir/sunnonlinsol_petscsnes.c.o]
Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
make[2]: *** [CMakeFiles/Makefile2:8955:
src/sunnonlinsol/petscsnes/CMakeFiles/sundials_sunnonlinsolpetscsnes_obj_shared.dir/all]
Error 2
/usr/bin/cmake -E touch
src/sundials/fmod/CMakeFiles/sundials_fgeneric_mod_obj_shared.dir/fsundials_nvector_mod.f90.o.provides.build
[ 13%] Built target test_nvectormpi_obj
/usr/bin/cmake -E cmake_copy_f90_mod fortran_SHARED/fsundials_matrix_mod.mod
src/sundials/fmod/CMakeFiles/sundials_fgeneric_mod_obj_shared.dir/fsundials_matrix_mod.mod.stamp
GNU
[ 13%] Building C object
examples/sunmatrix/band/CMakeFiles/test_sunmatrix_band.dir/__/test_sunmatrix.c.o
cd /<<PKGBUILDDIR>>/debian/build/examples/sunmatrix/band && /usr/bin/cc
-I/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include
-I/<<PKGBUILDDIR>>/examples/sunmatrix/band/.
-I/<<PKGBUILDDIR>>/examples/sunmatrix/band/.. -I/<<PKGBUILDDIR>>/include
-I/<<PKGBUILDDIR>>/debian/build/include -I/<<PKGBUILDDIR>>/src/sundials
-fcommon -std=gnu99 -MD -MT
examples/sunmatrix/band/CMakeFiles/test_sunmatrix_band.dir/__/test_sunmatrix.c.o
-MF CMakeFiles/test_sunmatrix_band.dir/__/test_sunmatrix.c.o.d -o
CMakeFiles/test_sunmatrix_band.dir/__/test_sunmatrix.c.o -c
/<<PKGBUILDDIR>>/examples/sunmatrix/test_sunmatrix.c
[ 13%] Building C object
examples/sunmatrix/dense/CMakeFiles/test_sunmatrix_dense.dir/__/test_sunmatrix.c.o
cd /<<PKGBUILDDIR>>/debian/build/examples/sunmatrix/dense && /usr/bin/cc
-I/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include
-I/<<PKGBUILDDIR>>/examples/sunmatrix/dense/.
-I/<<PKGBUILDDIR>>/examples/sunmatrix/dense/.. -I/<<PKGBUILDDIR>>/include
-I/<<PKGBUILDDIR>>/debian/build/include -I/<<PKGBUILDDIR>>/src/sundials
-fcommon -std=gnu99 -MD -MT
examples/sunmatrix/dense/CMakeFiles/test_sunmatrix_dense.dir/__/test_sunmatrix.c.o
-MF CMakeFiles/test_sunmatrix_dense.dir/__/test_sunmatrix.c.o.d -o
CMakeFiles/test_sunmatrix_dense.dir/__/test_sunmatrix.c.o -c
/<<PKGBUILDDIR>>/examples/sunmatrix/test_sunmatrix.c
/usr/bin/cmake -E touch
src/sundials/fmod/CMakeFiles/sundials_fgeneric_mod_obj_shared.dir/fsundials_matrix_mod.f90.o.provides.build
[ 13%] Building Fortran object
src/sundials/fmod/CMakeFiles/sundials_fgeneric_mod_obj_shared.dir/fsundials_linearsolver_mod.f90.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
cd /<<PKGBUILDDIR>>/debian/build/src/sundials/fmod && /usr/bin/gfortran
-Dsundials_generic_EXPORTS
-I/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include
-I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/debian/build/include
-I/<<PKGBUILDDIR>>/src/sundials -I/<<PKGBUILDDIR>>/debian/build/fortran_SHARED
-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -fcf-protection -J../../../fortran_SHARED -fPIC -cpp
-c /<<PKGBUILDDIR>>/src/sundials/fmod/fsundials_linearsolver_mod.f90 -o
CMakeFiles/sundials_fgeneric_mod_obj_shared.dir/fsundials_linearsolver_mod.f90.o
[ 13%] Built target test_sunmatrix_obj
/usr/bin/cmake -E cmake_copy_f90_mod
fortran_SHARED/fsundials_nonlinearsolver_mod.mod
src/sundials/fmod/CMakeFiles/sundials_fgeneric_mod_obj_shared.dir/fsundials_nonlinearsolver_mod.mod.stamp
GNU
/usr/bin/cmake -E touch
src/sundials/fmod/CMakeFiles/sundials_fgeneric_mod_obj_shared.dir/fsundials_nonlinearsolver_mod.f90.o.provides.build
[ 13%] Linking C executable test_sunmatrix_band
cd /<<PKGBUILDDIR>>/debian/build/examples/sunmatrix/band && /usr/bin/cmake -E
cmake_link_script CMakeFiles/test_sunmatrix_band.dir/link.txt --verbose=1
/usr/bin/cc -fcommon -Wl,-z,relro -Wl,-z,now
CMakeFiles/test_sunmatrix_band.dir/test_sunmatrix_band.c.o
CMakeFiles/test_sunmatrix_band.dir/__/test_sunmatrix.c.o -o test_sunmatrix_band
-Wl,-rpath,/<<PKGBUILDDIR>>/debian/build/src/nvector/serial:/<<PKGBUILDDIR>>/debian/build/src/sunmatrix/band
../../../src/nvector/serial/libsundials_nvecserial.so.6.4.1
../../../src/sunmatrix/band/libsundials_sunmatrixband.so.4.4.1 -lm
[ 14%] Linking C executable test_sunmatrix_dense
cd /<<PKGBUILDDIR>>/debian/build/examples/sunmatrix/dense && /usr/bin/cmake -E
cmake_link_script CMakeFiles/test_sunmatrix_dense.dir/link.txt --verbose=1
/usr/bin/cc -fcommon -Wl,-z,relro -Wl,-z,now
CMakeFiles/test_sunmatrix_dense.dir/test_sunmatrix_dense.c.o
CMakeFiles/test_sunmatrix_dense.dir/__/test_sunmatrix.c.o -o
test_sunmatrix_dense
-Wl,-rpath,/<<PKGBUILDDIR>>/debian/build/src/nvector/serial:/<<PKGBUILDDIR>>/debian/build/src/sunmatrix/dense
../../../src/nvector/serial/libsundials_nvecserial.so.6.4.1
../../../src/sunmatrix/dense/libsundials_sunmatrixdense.so.4.4.1 -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
[ 14%] Built target test_sunmatrix_band
/usr/bin/cmake -E cmake_copy_f90_mod
fortran_SHARED/fsundials_linearsolver_mod.mod
src/sundials/fmod/CMakeFiles/sundials_fgeneric_mod_obj_shared.dir/fsundials_linearsolver_mod.mod.stamp
GNU
make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
/usr/bin/cmake -E touch
src/sundials/fmod/CMakeFiles/sundials_fgeneric_mod_obj_shared.dir/fsundials_linearsolver_mod.f90.o.provides.build
[ 14%] Built target test_sunmatrix_dense
make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
[ 14%] Built target sundials_fgeneric_mod_obj_shared
make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
[ 14%] Built target test_nvector_obj
make[2]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
make[1]: *** [Makefile:149: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
dh_auto_build: error: cd debian/build && make -j8 "INSTALL=install
--strip-program=true" VERBOSE=1 returned exit code 2
make: *** [debian/rules:50: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: sundials
Source-Version: 7.1.1+dfsg1-1exp1
Done: Drew Parsons <[email protected]>
We believe that the bug you reported is fixed in the latest version of
sundials, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <[email protected]> (supplier of updated sundials package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 17 Sep 2024 23:55:57 +0200
Source: sundials
Binary: libsundials-arkode6 libsundials-arkode6-dbgsym libsundials-core7
libsundials-core7-dbgsym libsundials-cvode7 libsundials-cvode7-dbgsym
libsundials-cvodes7 libsundials-cvodes7-dbgsym libsundials-dev
libsundials-fortran-dev libsundials-ida7 libsundials-ida7-dbgsym
libsundials-idas6 libsundials-idas6-dbgsym libsundials-kinsol7
libsundials-kinsol7-dbgsym libsundials-nvecparallel-hypre7
libsundials-nvecparallel-hypre7-dbgsym libsundials-nvecparallel-mpi7
libsundials-nvecparallel-mpi7-dbgsym libsundials-nvecparallel-openmp7
libsundials-nvecparallel-openmp7-dbgsym libsundials-nvecparallel-petsc7
libsundials-nvecparallel-petsc7-dbgsym libsundials-nvecparallel-pthread7
libsundials-nvecparallel-pthread7-dbgsym libsundials-nvecserial7
libsundials-nvecserial7-dbgsym libsundials-sunlinsol5
libsundials-sunlinsol5-dbgsym libsundials-sunmatrix5
libsundials-sunmatrix5-dbgsym
Architecture: source amd64
Version: 7.1.1+dfsg1-1exp1
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Team
<[email protected]>
Changed-By: Drew Parsons <[email protected]>
Description:
libsundials-arkode6 - differential equation solver (SUNDIALS library)
libsundials-core7 - differential equation solver (SUNDIALS library)
libsundials-cvode7 - ordinary differential equation solver (SUNDIALS library)
libsundials-cvodes7 - ODE solver with sensistivity analysis (SUNDIALS library)
libsundials-dev - Package providing everything for SUNDIALS dev work
libsundials-fortran-dev - Package providing everything for SUNDIALS dev work.
Fortran files
libsundials-ida7 - differential-algebraic system solver (SUNDIALS library)
libsundials-idas6 - IDA solver with sensitivity capabilities (SUNDIALS library)
libsundials-kinsol7 - KINSOL solver (SUNDIALS library)
libsundials-nvecparallel-hypre7 - HYPRE vector operations library (SUNDIALS
library)
libsundials-nvecparallel-mpi7 - MPI vector operations library (SUNDIALS
library)
libsundials-nvecparallel-openmp7 - OpenMP vector operations library (SUNDIALS
library)
libsundials-nvecparallel-petsc7 - PETSc vector operations library (SUNDIALS
library)
libsundials-nvecparallel-pthread7 - Pthread vector operations library
(SUNDIALS library)
libsundials-nvecserial7 - Non-parallel vector operations library (SUNDIALS
library)
libsundials-sunlinsol5 - differential equation solver (SUNDIALS library)
libsundials-sunmatrix5 - differential equation solver (SUNDIALS library)
Closes: 892910 1069134 1075547 1077028
Changes:
sundials (7.1.1+dfsg1-1exp1) experimental; urgency=medium
.
* Team upload.
* New upstream release
- deprecates all debian patches
- provides shared fortran libraries. Closes: #892910.
- SUNDIALSConfig.cmake KLU support provides include path
/usr/include/suitesparse for klu.h. Closes: #1069134.
- supports gcc-14. Closes: #1075547.
* debian/watch: include index 1 in +dfsg1 name mangling
* specify -DSUNDIALS_INDEX_SIZE=32 (32-bit integers for indexing)
for compatibility with PETSc. 64-bit integers would build
against petsc64-dev not petsc-dev (the latter is default).
Closes: #1075547.
* Core libraries (libsundials_core.so.*) provided in new
libsundials-core7 package. libsundials_generic.so.*
(formerly in libsundials-sunlinsol3) no longer generated.
* ABI updates in sublibraries
- ABI 7
libsundials-cvode7
libsundials-cvodes7
libsundials-ida7
libsundials-kinsol7
libsundials-nvec*7
- ABI 6
libsundials-arkode6
libsundials-idas6
- ABI 5
libsundials-sunlinsol5
libsundials-sunmatrix5
- libsundials-sunlinsol5 also provides:
libsundials_fsunnonlinsolfixedpoint_mod.so.4
libsundials_fsunnonlinsolnewton_mod.so.4
libsundials_sunnonlinsolfixedpoint.so.4
libsundials_sunnonlinsolnewton.so.4
libsundials_sunnonlinsolpetscsnes.so.7
* Depends: pkgconf not pkg-config. Closes: #1077028.
* update debian/copyright
- BSD-3-clause with LLNS NOTICE applies to all files (*)
2002-2024, Lawrence Livermore National Security and
Southern Methodist University
- debian/* follows simple BSD-3-clause (Debian maintainers are not
funded by LLNS contracts)
* update lintian overrides
- add package-name-doesnt-match-sonames to all library packages
- libsundials_nvecparallel now links to libc
* debian patch sundials_fcore_mod_soname.patch adds soname to
libsundials_fcore_mod.so (same soversion as libsundials_core.so)
* debian/tests: use cmake to build and run examples. Run selected
tests from all components: arkode cvode cvodes ida idas kinsol
and sunnonlinsol. Skip nvector, sunlinsol, sunmatrix (their tests
don't pass at the moment).
* Standards-Version: 4.7.0
Checksums-Sha1:
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libsundials-kinsol7-dbgsym_7.1.1+dfsg1-1exp1_amd64.deb
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libsundials-kinsol7_7.1.1+dfsg1-1exp1_amd64.deb
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libsundials-nvecparallel-hypre7_7.1.1+dfsg1-1exp1_amd64.deb
680b604f968298c93b87b60494125cb3f89c54d4 34320
libsundials-nvecparallel-mpi7-dbgsym_7.1.1+dfsg1-1exp1_amd64.deb
70d68f36630be6d07d5fba382774077850c7031e 82916
libsundials-nvecparallel-mpi7_7.1.1+dfsg1-1exp1_amd64.deb
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