Your message dated Fri, 28 Feb 2025 13:03:23 +0000
with message-id <[email protected]>
and subject line Bug#1072655: fixed in silx 2.2.1+dfsg-1
has caused the Debian Bug report #1072655,
regarding silx: no-opencl tests fail with pytest8.2
to be marked as done.
This means that you claim that the problem has been dealt with.
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--
1072655: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1072655
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: silx
Version: 2.0.1+dfsg-3
Severity: normal
Tags: patch
X-Debbugs-Cc: [email protected]
User: [email protected]
Usertags: origin-ubuntu oracular ubuntu-patch
Dear maintainer,
silx's autopkgtests (the no-opencl tests in partiuclar) fail with pytest 8.2
due to a known issue upstream [1]. It hasn't been committed upstream,
but there is an open PR to fix the issue [2]. I cherry-picked the fix
and applied it in Ubuntu to resolve the issue.
* d/p/0010-SpecFile-deallocation-issue.patch: Fix an issue with pytest
runner segfaulting with Pytest 8.2+ (LP: 2068521).
Thanks for considering the patch.
[1] https://github.com/silx-kit/silx/issues/4128
[2] https://github.com/silx-kit/silx/pull/4129/
-- System Information:
Debian Release: trixie/sid
APT prefers oracular
APT policy: (500, 'oracular'), (100, 'oracular-proposed')
Architecture: amd64 (x86_64)
Kernel: Linux 6.8.0-31-generic (SMP w/16 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
diff -Nru silx-2.0.1+dfsg/debian/patches/0010-SpecFile-deallocation-issue.patch
silx-2.0.1+dfsg/debian/patches/0010-SpecFile-deallocation-issue.patch
--- silx-2.0.1+dfsg/debian/patches/0010-SpecFile-deallocation-issue.patch
1969-12-31 16:00:00.000000000 -0800
+++ silx-2.0.1+dfsg/debian/patches/0010-SpecFile-deallocation-issue.patch
2024-06-05 12:21:03.000000000 -0700
@@ -0,0 +1,24 @@
+Description: Fixes autopkgtests with pytest 8.2+
+ The clean up for tests in src/silx/io/test/test_specfilewrapper.py was
+ causing the pytest runner to segfault in pytest 8.2, causing the autopkgtests
+ to fail.
+Author: Chris Peterson <[email protected]>
+Origin: upstream, https://github.com/silx-kit/silx/pull/4129/
+Bug: https://github.com/silx-kit/silx/issues/4128
+Bug-Ubuntu: https://bugs.launchpad.net/ubuntu/+source/silx/+bug/2068521
+Last-Update: 2024-06-05
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- a/src/silx/io/specfile.pyx
++++ b/src/silx/io/specfile.pyx
+@@ -658,8 +658,8 @@
+ else:
+ self.filename = filename
+
+- def __dealloc__(self):
+- """Destructor: Calls SfClose(self.handle)"""
++ def __del__(self):
++ """Finalizer: Calls SfClose(self.handle)"""
+ self.close()
+
+ def close(self):
diff -Nru silx-2.0.1+dfsg/debian/patches/series
silx-2.0.1+dfsg/debian/patches/series
--- silx-2.0.1+dfsg/debian/patches/series 2024-04-16 01:47:09.000000000
-0700
+++ silx-2.0.1+dfsg/debian/patches/series 2024-06-05 12:05:23.000000000
-0700
@@ -2,3 +2,4 @@
0007-python3.10-fix.patch
0009-Skip-testing-nanmin-on-float64-arrays-on-mips-el.patch
0008-deal-with-h5py-until-we-solved-1051781.patch
+0010-SpecFile-deallocation-issue.patch
--- End Message ---
--- Begin Message ---
Source: silx
Source-Version: 2.2.1+dfsg-1
Done: Picca Frédéric-Emmanuel <[email protected]>
We believe that the bug you reported is fixed in the latest version of
silx, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Picca Frédéric-Emmanuel <[email protected]> (supplier of updated silx package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 28 Feb 2025 13:16:01 +0100
Source: silx
Architecture: source
Version: 2.2.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Picca Frédéric-Emmanuel <[email protected]>
Closes: 1013114 1047562 1072655 1099038
Changes:
silx (2.2.1+dfsg-1) unstable; urgency=medium
.
* Rely on pre-initialized dpkg-architecture variables.
* New upstream version 2.2.1+dfsg
.
silx (2.2.0+dfsg-2) unstable; urgency=medium
.
[ Alexandre Detiste ]
* remove noise from patch
.
[ Picca Frédéric-Emmanuel ]
* Bug fix: "Permission denied:
'/usr/lib/python3/dist-packages/silx/pytest-cache-files-0lxt05lh'",
thanks to Picca Frédéric-Emmanuel (Closes: #1099038).
* Bug fix: "no-opencl tests fail with pytest8.2", thanks to Chris
Peterson (Closes: #1072655).
* Bug fix: "TestRetry fails with scipy 1.8.1-4", thanks to Drew Parsons
(Closes: #1013114).
* Bug fix: "Fails to build source after successful build", thanks to
Lucas Nussbaum (Closes: #1047562).
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745f8b342cdbc7e665783eedc9080db144fa0fa1 157644 silx_2.2.1+dfsg-1.debian.tar.xz
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Files:
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df5f7141109279f954994cf0c8273074 17526564 science optional
silx_2.2.1+dfsg.orig.tar.xz
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silx_2.2.1+dfsg-1.debian.tar.xz
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