Your message dated Sun, 05 Apr 2026 15:46:35 +0000
with message-id <[email protected]>
and subject line Bug#1114267: fixed in pointpats 2.5.5-1
has caused the Debian Bug report #1114267,
regarding pointpats: FTBFS: dpkg-buildpackage: error: debian/rules binary
subprocess returned exit status 2
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
1114267: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1114267
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:pointpats
Version: 2.5.1-2
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build.
Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202509/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:pointpats, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build"
module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation
--wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pointpats
* Building wheel...
/usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82:
SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
!!
********************************************************************************
Please use a simple string containing a SPDX expression for
`project.license`. You can also use `project.license-files`. (Both options
available on setuptools>=77.0.0).
By 2026-Feb-18, you need to update your project and remove deprecated
calls
or your builds will no longer be supported.
See
https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license
for details.
********************************************************************************
!!
corresp(dist, value, root_dir)
/usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61:
SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX
license expression:
License :: OSI Approved :: BSD License
See
https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license
for details.
********************************************************************************
!!
dist._finalize_license_expression()
/usr/lib/python3/dist-packages/setuptools/dist.py:759:
SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX
license expression:
License :: OSI Approved :: BSD License
See
https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license
for details.
********************************************************************************
!!
self._finalize_license_expression()
running bdist_wheel
running build
running build_py
creating build/lib/pointpats
copying pointpats/random.py -> build/lib/pointpats
copying pointpats/spacetime.py -> build/lib/pointpats
copying pointpats/geometry.py -> build/lib/pointpats
copying pointpats/pointpattern.py -> build/lib/pointpats
copying pointpats/kde.py -> build/lib/pointpats
copying pointpats/window.py -> build/lib/pointpats
copying pointpats/process.py -> build/lib/pointpats
copying pointpats/util.py -> build/lib/pointpats
copying pointpats/centrography.py -> build/lib/pointpats
copying pointpats/quadrat_statistics.py -> build/lib/pointpats
copying pointpats/distance_statistics.py -> build/lib/pointpats
copying pointpats/__init__.py -> build/lib/pointpats
creating build/lib/pointpats/tests
copying pointpats/tests/test_spacetime.py -> build/lib/pointpats/tests
copying pointpats/tests/test_distance_statistics.py -> build/lib/pointpats/tests
copying pointpats/tests/test_pointpattern.py -> build/lib/pointpats/tests
copying pointpats/tests/test_centrography.py -> build/lib/pointpats/tests
copying pointpats/tests/test_quadrat_statistics.py -> build/lib/pointpats/tests
copying pointpats/tests/test_kde.py -> build/lib/pointpats/tests
copying pointpats/tests/__init__.py -> build/lib/pointpats/tests
running egg_info
creating pointpats.egg-info
writing pointpats.egg-info/PKG-INFO
writing dependency_links to pointpats.egg-info/dependency_links.txt
writing requirements to pointpats.egg-info/requires.txt
writing top-level names to pointpats.egg-info/top_level.txt
writing manifest file 'pointpats.egg-info/SOURCES.txt'
reading manifest file 'pointpats.egg-info/SOURCES.txt'
adding license file 'LICENSE.txt'
writing manifest file 'pointpats.egg-info/SOURCES.txt'
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/pointpats
copying build/lib/pointpats/random.py ->
build/bdist.linux-x86_64/wheel/./pointpats
creating build/bdist.linux-x86_64/wheel/pointpats/tests
copying build/lib/pointpats/tests/test_spacetime.py ->
build/bdist.linux-x86_64/wheel/./pointpats/tests
copying build/lib/pointpats/tests/test_distance_statistics.py ->
build/bdist.linux-x86_64/wheel/./pointpats/tests
copying build/lib/pointpats/tests/test_pointpattern.py ->
build/bdist.linux-x86_64/wheel/./pointpats/tests
copying build/lib/pointpats/tests/test_centrography.py ->
build/bdist.linux-x86_64/wheel/./pointpats/tests
copying build/lib/pointpats/tests/test_quadrat_statistics.py ->
build/bdist.linux-x86_64/wheel/./pointpats/tests
copying build/lib/pointpats/tests/test_kde.py ->
build/bdist.linux-x86_64/wheel/./pointpats/tests
copying build/lib/pointpats/tests/__init__.py ->
build/bdist.linux-x86_64/wheel/./pointpats/tests
copying build/lib/pointpats/spacetime.py ->
build/bdist.linux-x86_64/wheel/./pointpats
copying build/lib/pointpats/geometry.py ->
build/bdist.linux-x86_64/wheel/./pointpats
copying build/lib/pointpats/pointpattern.py ->
build/bdist.linux-x86_64/wheel/./pointpats
copying build/lib/pointpats/kde.py -> build/bdist.linux-x86_64/wheel/./pointpats
copying build/lib/pointpats/window.py ->
build/bdist.linux-x86_64/wheel/./pointpats
copying build/lib/pointpats/process.py ->
build/bdist.linux-x86_64/wheel/./pointpats
copying build/lib/pointpats/util.py ->
build/bdist.linux-x86_64/wheel/./pointpats
copying build/lib/pointpats/centrography.py ->
build/bdist.linux-x86_64/wheel/./pointpats
copying build/lib/pointpats/quadrat_statistics.py ->
build/bdist.linux-x86_64/wheel/./pointpats
copying build/lib/pointpats/distance_statistics.py ->
build/bdist.linux-x86_64/wheel/./pointpats
copying build/lib/pointpats/__init__.py ->
build/bdist.linux-x86_64/wheel/./pointpats
running install_egg_info
Copying pointpats.egg-info to
build/bdist.linux-x86_64/wheel/./pointpats-2.5.1.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/pointpats-2.5.1.dist-info/WHEEL
creating
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pointpats/.tmp-4j5f_gde/pointpats-2.5.1-py3-none-any.whl'
and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'pointpats/__init__.py'
adding 'pointpats/centrography.py'
adding 'pointpats/distance_statistics.py'
adding 'pointpats/geometry.py'
adding 'pointpats/kde.py'
adding 'pointpats/pointpattern.py'
adding 'pointpats/process.py'
adding 'pointpats/quadrat_statistics.py'
adding 'pointpats/random.py'
adding 'pointpats/spacetime.py'
adding 'pointpats/util.py'
adding 'pointpats/window.py'
adding 'pointpats/tests/__init__.py'
adding 'pointpats/tests/test_centrography.py'
adding 'pointpats/tests/test_distance_statistics.py'
adding 'pointpats/tests/test_kde.py'
adding 'pointpats/tests/test_pointpattern.py'
adding 'pointpats/tests/test_quadrat_statistics.py'
adding 'pointpats/tests/test_spacetime.py'
adding 'pointpats-2.5.1.dist-info/licenses/LICENSE.txt'
adding 'pointpats-2.5.1.dist-info/METADATA'
adding 'pointpats-2.5.1.dist-info/WHEEL'
adding 'pointpats-2.5.1.dist-info/top_level.txt'
adding 'pointpats-2.5.1.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Successfully built pointpats-2.5.1-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with
"installer" module
debian/rules execute_after_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
PYTHONPATH=. http_proxy='http://127.0.0.1:9/' python3 -m sphinx -N -d
debian/doctrees -bhtml docs/ debian/html
Running Sphinx v8.2.3
mkdir -p failed for path /sbuild-nonexistent/.config/matplotlib: [Errno 13]
Permission denied: '/sbuild-nonexistent'
Matplotlib created a temporary cache directory at /tmp/matplotlib-k7fs3myd
because there was an issue with the default path
(/sbuild-nonexistent/.config/matplotlib); it is highly recommended to set the
MPLCONFIGDIR environment variable to a writable directory, in particular to
speed up the import of Matplotlib and to better support multiprocessing.
WARNING: Calling get_html_theme_path is deprecated. If you are calling it to
define html_theme_path, you are safe to remove that code.
loading translations [en]... done
making output directory... done
Converting `source_suffix = '.rst'` to `source_suffix = {'.rst':
'restructuredtext'}`.
WARNING: The config value `html_theme_path' has type `str'; expected `list' or
`tuple'.
checking bibtex cache... out of date
parsing bibtex file /<<PKGBUILDDIR>>/docs/_static/references.bib... parsed 7
entries
Versions
========
* Platform: linux;
(Linux-6.12.41+deb13-cloud-amd64-x86_64-with-glibc2.41)
* Python version: 3.13.7 (CPython)
* Sphinx version: 8.2.3
* Docutils version: 0.21.2
* Jinja2 version: 3.1.6
* Pygments version: 2.18.0
Last Messages
=============
None.
Loaded Extensions
=================
None.
Traceback
=========
File "/usr/lib/python3.13/pathlib/_local.py", line 517, in stat
return os.stat(self, follow_symlinks=follow_symlinks)
~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
PermissionError: [Errno 13] Permission denied: '/root/theme.toml'
The full traceback has been saved in:
/tmp/sphinx-err-xid6shj6.log
To report this error to the developers, please open an issue at
<https://github.com/sphinx-doc/sphinx/issues/>. Thanks!
Please also report this if it was a user error, so that a better error message
can be provided next time.
make[1]: *** [debian/rules:16: execute_after_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:7: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: pointpats
Source-Version: 2.5.5-1
Done: Josenilson Ferreira da Silva <[email protected]>
We believe that the bug you reported is fixed in the latest version of
pointpats, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Josenilson Ferreira da Silva <[email protected]> (supplier of updated
pointpats package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 04 Apr 2026 22:36:58 -0300
Source: pointpats
Architecture: source
Version: 2.5.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Josenilson Ferreira da Silva <[email protected]>
Closes: 1114267
Changes:
pointpats (2.5.5-1) unstable; urgency=medium
.
* New upstream version 2.5.5
* debian/watch: Update to version 5 format
* debian/control:
- Added Build-depends pandoc <!nodoc>
- Bumped Standards-Version to 4.7.3
- Drop python3-sphinx-bootstrap-theme build-dependency
- Removed commented Testsuite field"
- Removed redundant Priority field
- Removed redundant Rules-Requires-Root
* debian/rules:
- Removed tests directory from installed package
- Simplify test configuration using PYBUILD_TEST_ARGS
* debian/patches:
- Added 009.use-intersphinx-local.patch
- Added to disable nbsphinx notebook execution
- Update to fix bootstrap theme and permission error (Closes: #1114267)
- Update to fix lambda escape sequence in PoissonPointProcess
* debian/tests:
- Fix missing backslash in run-tests script"
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