Your message dated Sat, 09 May 2026 20:53:21 +0000
with message-id <[email protected]>
and subject line Bug#1117996: fixed in dials 3.28.0+dfsg3-1
has caused the Debian Bug report #1117996,
regarding dials: autopkgtest regression with scikit-learn 1.7.2
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1117996: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1117996
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: dials
Version: 3.25.0+dfsg3-2
Severity: important
User: [email protected]
Usertags: scikit-learn-1.7
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Hash: SHA512
Dear maintainer,
your package has an autopkgtest regression with scikit-learn 1.7.2.
Relevant excerpt from
https://ci.debian.net/packages/d/dials/unstable/amd64/65190517/
follows:
1210s ____________________________ test_IhTable_freework
_____________________________
1210s
1210s large_reflection_table = <dials_array_family_flex_ext.reflection_table
object at 0x7fa84e3c7330>
1210s small_reflection_table = <dials_array_family_flex_ext.reflection_table
object at 0x7fa84e3c4fe0>
1210s test_sg = <cctbx_sgtbx_ext.space_group object at 0x7fa84e3c7e70>
1210s
1210s def test_IhTable_freework(large_reflection_table,
small_reflection_table, test_sg):
1210s sel1 = flex.bool(7, True)
1210s sel1[6] = False
1210s sel2 = flex.bool(4, True)
1210s sel2[1] = False
1210s
1210s > Ih_table = IhTable(
1210s reflection_tables=[
1210s large_reflection_table.select(sel1),
1210s small_reflection_table.select(sel2),
1210s ],
1210s indices_lists=[sel1.iselection(), sel2.iselection()],
1210s space_group=test_sg,
1210s nblocks=2,
1210s free_set_percentage=50.0,
1210s )
1210s
1210s tests/algorithms/scaling/test_Ih_table.py:461:
1210s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _
1210s /usr/lib/python3/dist-packages/dials/algorithms/scaling/Ih_table.py:132:
in __init__
1210s self.extract_free_set()
1210s /usr/lib/python3/dist-packages/dials/algorithms/scaling/Ih_table.py:438:
in extract_free_set
1210s free_block = IhTableBlock(
1210s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _
1210s
1210s self = <dials.algorithms.scaling.Ih_table.IhTableBlock object at
0x7fa82807f770>
1210s n_groups = 3, n_refl = np.int64(5), n_datasets = 2
1210s
1210s def __init__(self, n_groups: int, n_refl: int, n_datasets: int = 1):
1210s """Create empty datastructures to which data can later be
added."""
1210s self.Ih_table = pd.DataFrame()
1210s self.block_selections = [None] * n_datasets
1210s > self.h_index_matrix = sparse.matrix(n_refl, n_groups)
1210s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
1210s E Boost.Python.ArgumentError: Python argument types in
1210s E matrix.__init__(matrix, numpy.int64, int)
1210s E did not match C++ signature:
1210s E __init__(boost::python::api::object, unsigned long rows,
unsigned long columns, boost::python::list elements_by_columns)
1210s E __init__(_object*, unsigned long rows, unsigned long columns)
1210s
1210s /usr/lib/python3/dist-packages/dials/algorithms/scaling/Ih_table.py:519:
ArgumentError
Cheers
Timo
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--- End Message ---
--- Begin Message ---
Source: dials
Source-Version: 3.28.0+dfsg3-1
Done: Roland Mas <[email protected]>
We believe that the bug you reported is fixed in the latest version of
dials, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Roland Mas <[email protected]> (supplier of updated dials package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 09 May 2026 16:08:20 +0200
Source: dials
Architecture: source
Version: 3.28.0+dfsg3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Roland Mas <[email protected]>
Closes: 1088487 1117996 1129786
Changes:
dials (3.28.0+dfsg3-1) unstable; urgency=medium
.
* New upstream release. This closes "autopkgtest regression with
scikit-learn 1.7.2", thanks to Timo Röhling (Closes: #1117996); also
"error: ‘io_service’ in namespace ‘boost::asio’ does not name a type;
did you mean ‘use_service’?", thanks to Santiago Vila (Closes:
#1129786).
* Bug fix: "move from twitter-bootstrap{3,4} to bootstrap-html (v5)",
thanks to [email protected]</a>; (Closes: #1088487).
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