Your message dated Fri, 7 Aug 2026 21:38:52 +0200
with message-id <E1wsQP6-0000000EMFb-3r8p@gelly>
and subject line dolfin: FTBFS against HDF5 2.1.0
has caused the Debian Bug report #1139620,
regarding dolfin: FTBFS against HDF5 2.1.0
to be marked as done.
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1139620: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139620
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--- Begin Message ---
Source: dolfin
Version: 2019.2.0~legacy20240219.1c52e83-29
Severity: important
Tags: ftbfs patch
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Hi,
During a test rebuild of HDF5's reverse dependencies against HDF5 2.1.0
currently in experimental, dolfin FTBFS because its build toolchain
doesn't support this new major release.
The attached patch is a workaround for this issue and supports both
HDF5 1.14.6 in unstable and HDF5 2.1.0 in experimental.
Best,
_g.
- -- System Information:
Debian Release: 12.0
Architecture: amd64 (x86_64)
Kernel: Linux 6.1.0-44-amd64 (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
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diff -Nru dolfin-2019.2.0~legacy20240219.1c52e83/debian/changelog
dolfin-2019.2.0~legacy20240219.1c52e83/debian/changelog
--- dolfin-2019.2.0~legacy20240219.1c52e83/debian/changelog 2026-05-11
10:24:37.000000000 +0200
+++ dolfin-2019.2.0~legacy20240219.1c52e83/debian/changelog 2026-06-08
21:04:55.000000000 +0200
@@ -1,3 +1,10 @@
+dolfin (2019.2.0~legacy20240219.1c52e83-29.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Fix FTBFS against HDF5 2.1.0
+
+ -- Gilles Filippini <[email protected]> Mon, 08 Jun 2026 21:04:55 +0200
+
dolfin (2019.2.0~legacy20240219.1c52e83-29) unstable; urgency=medium
* Add eigen_5_compatibility.patch, which changes the cmake module to find
diff -Nru dolfin-2019.2.0~legacy20240219.1c52e83/debian/rules
dolfin-2019.2.0~legacy20240219.1c52e83/debian/rules
--- dolfin-2019.2.0~legacy20240219.1c52e83/debian/rules 2026-05-02
14:40:33.000000000 +0200
+++ dolfin-2019.2.0~legacy20240219.1c52e83/debian/rules 2026-06-08
21:04:55.000000000 +0200
@@ -1,6 +1,7 @@
#!/usr/bin/make -f
include /usr/share/dpkg/architecture.mk
+include /usr/share/mpi-default-dev/debian_defaults
OS_ID := $(shell grep -E "^ID" /etc/os-release | sed "s/^ID=//")
@@ -199,7 +200,8 @@
-D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF \
-D DOLFIN_ENABLE_TRILINOS:BOOL=OFF \
-D DOLFIN_ENABLE_HDF5:BOOL=ON \
- -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc \
+ -D HDF5_NO_FIND_PACKAGE_CONFIG_FILE:BOOL=ON \
+ -D
HDF5_ROOT=/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/$(ARCH_DEFAULT_MPI_IMPL) \
-D DOLFIN_ENABLE_PARMETIS:BOOL=OFF \
-D DOLFIN_ENABLE_SCOTCH:BOOL=ON \
-D DOLFIN_ENABLE_DOCS:BOOL=OFF \
--- End Message ---
--- Begin Message ---
fixed 1139620 2019.2.0~legacy20240219.1c52e83-30
thanks
This patch had been applied in -30,
but the bug hadn't been closed.
--- End Message ---
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