Your message dated Mon, 21 Sep 2026 16:08:57 +0000
with message-id <[email protected]>
and subject line Bug#1139554: fixed in xmds2 3.1.0+dfsg4-1
has caused the Debian Bug report #1139554,
regarding xmds2: FTBFS against HDF5 2.1.0 - The waf toolchain has to be adapted
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1139554: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139554
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: xmds2
Version: 3.1.0+dfsg2-13
Severity: important
Tags: ftbfs
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Hi,
During a test rebuild of HDF5's reverse dependcies against HDF5 2.1.0
currently in experimental, xmds2 FTBFS with:
Checking for program 'h5cc' : /usr/bin/h5cc
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/bin-test/xmds2", line 4, in <module>
sys.exit(parser2.main())
~~~~~~~~~~~~^^
File "/<<PKGBUILDDIR>>/xpdeint/parser2.py", line 219, in main
return Configuration.run_reconfig(includePaths, libPaths)
~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^
File "/<<PKGBUILDDIR>>/xpdeint/Configuration.py", line 145, in run_reconfig
return run_config(includePaths = includePaths, libPaths = libPaths)
File "/<<PKGBUILDDIR>>/xpdeint/Configuration.py", line 119, in run_config
ret = ctx.execute()
File "/<<PKGBUILDDIR>>/xpdeint/waf/waflib/Configure.py", line 159, in execute
super(ConfigurationContext, self).execute()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
File "/<<PKGBUILDDIR>>/xpdeint/waf/waflib/Context.py", line 204, in execute
self.recurse([os.path.dirname(g_module.root_path)])
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/<<PKGBUILDDIR>>/xpdeint/Configuration.py", line 56, in <lambda>
lambda x, y: getattr(Context.g_module, x.cmd or x.fun, Utils.nada)(x)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^
File "/<<PKGBUILDDIR>>/xpdeint/Configuration.py", line 85, in _
return f(ctx, *args, **kw)
File "/<<PKGBUILDDIR>>/xpdeint/support/wscript", line 754, in configure
configure_compiler()
~~~~~~~~~~~~~~~~~~^^
File "/<<PKGBUILDDIR>>/xpdeint/support/wscript", line 411, in
configure_compiler
hdf5_libpath = re.search(r'\s-L(\S+)', h5cc_shared_flags).group(1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'group'
I tried to poke into the xpdeint/support/wscript file; but while xmds2 seems
to build successfully many tests fail then. So I let it to the maintainer of
the package :)
Don't hesitate to reach if needed, as I am in touch with HDF5 devs and
they are willing to help.
Best,
_g.
- -- System Information:
Debian Release: 12.0
Architecture: amd64 (x86_64)
Kernel: Linux 6.1.0-44-amd64 (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
-----BEGIN PGP SIGNATURE-----
iQEzBAEBCgAdFiEEoJObzArDE05WtIyR7+hsbH/+z4MFAmooDZgACgkQ7+hsbH/+
z4OVagf/WS1Ms6g3LmIqrnu5sUZ6Wb+eFb8BomhmRB2YWPhpAjhRhoSkQaEbAO21
TsQ8vHx0Z8RQxkCBxJwt9+tjSvXEX7NCWMJ5lkh7nkOJY/eW2EUgtf5zG2tod02R
040ZwegD83SYlL0+d4yBfF7cnMEk9H0541aZKXKqymSf0At5wnPrrsUoIWxnO5g+
PXZdbXyyMmER3Okrnzn6hEdWsjpFhfnuAdsSa0mlxTPn5MezO1OllqvWKlU999O+
rbCD2UHw3zTf8g4c1Hu/BQ6YN3SNGJ/uQ0Gmk7sQEGJnwRIEa+NJZ0axul6/MWK3
gsXbwMUHMzVRL2KWPR0cTFTjxwk5Hw==
=nljZ
-----END PGP SIGNATURE-----
--- End Message ---
--- Begin Message ---
Source: xmds2
Source-Version: 3.1.0+dfsg4-1
Done: Rafael Laboissière <[email protected]>
We believe that the bug you reported is fixed in the latest version of
xmds2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Rafael Laboissière <[email protected]> (supplier of updated xmds2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 21 Sep 2026 13:19:10 +0000
Source: xmds2
Architecture: source
Version: 3.1.0+dfsg4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Rafael Laboissière <[email protected]>
Closes: 1139554
Changes:
xmds2 (3.1.0+dfsg4-1) unstable; urgency=medium
.
* Upload to unstable
* Repack the upstream tarball for a new “upstream version” 3.1.0+dfsg4.
The userdoc.orig tarball was accidentally left out of the last
release.
* Drop patches (applied upstream):
+ d/p/pygments-style-lexer.patch
+ d/p/extra-alignment-tab.patch
* d/p/avoid-clash-with-library-ssize.patch: New patch
* d/watch: Update Repacksuffix
.
xmds2 (3.1.0+dfsg3-1) experimental; urgency=medium
.
[ Rafael Laboissière ]
* New repackaged upstream tarball.
For some unknown reason, the upstream tarballs in the dgit and the
Salsa repositories became disaligned. Hence this new "upstream version".
* d/control:
+ Bump Standards-Version to 4.7.4 (no changes needed)
+ Bump Debhelper compatibility level to 14
.
[ Gilles Filippini ]
* d/patches/hdf5-2.1.0.patch: New patch (Closes: #1139554)
Checksums-Sha1:
fc01616067d84cbce7ffd4560401e4ba26e5f7b0 3147 xmds2_3.1.0+dfsg4-1.dsc
146b9782ab88ef24a3a90c214a1cdca3fd5a87fb 7140084
xmds2_3.1.0+dfsg4.orig-userdoc.tar.xz
50dd1dc97cbb267e52ad5a7a5e132341ec40bffe 12131144 xmds2_3.1.0+dfsg4.orig.tar.xz
6aa14e1ca0cad72561bed8ec4dae9bcad3acd2d5 20528
xmds2_3.1.0+dfsg4-1.debian.tar.xz
Checksums-Sha256:
f3435471c2104bff23108a683cb1a73e267dc5161896d03e7124fb23be359452 3147
xmds2_3.1.0+dfsg4-1.dsc
a7ffad84bda8a53b49050f6112a987552458fbac7b2e462a6a3e8c3952f4eaf1 7140084
xmds2_3.1.0+dfsg4.orig-userdoc.tar.xz
90f3b4cdd9533c5e307c3ace7f98a86bc4a14976a408ebf416708dc769700079 12131144
xmds2_3.1.0+dfsg4.orig.tar.xz
75154334d06cea152473a1ac031e492b013f48a7a10a356bc038a0bf981f19cd 20528
xmds2_3.1.0+dfsg4-1.debian.tar.xz
Files:
0cb1b28b8028f94dc3340bbba1477f3d 3147 science optional xmds2_3.1.0+dfsg4-1.dsc
b92638b82405d4dd79358e96532143f7 7140084 science optional
xmds2_3.1.0+dfsg4.orig-userdoc.tar.xz
cde77494e4f58049c50714107e004cec 12131144 science optional
xmds2_3.1.0+dfsg4.orig.tar.xz
3fa67ad6dff597920a9b32b64a1af9f1 20528 science optional
xmds2_3.1.0+dfsg4-1.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=DiEK
-----END PGP SIGNATURE-----
pgpPYIe0tydE_.pgp
Description: PGP signature
--- End Message ---
--
debian-science-maintainers mailing list
[email protected]
https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
