Source: r-cran-gsl Version: 1.9-10-1 Severity: important Tags: upstream Dear Maintainer,
Your package fails to build with GSL 2: configure: error: Need GSL version >= 1.12 ERROR: configuration failed for package 'gsl' This needs to be fixed for the ongoing gsl transition (#804246). The full build log is attached, as is a patch to update the build dependencies for GSL 2 (changing libgsl0-dev to libgsl-dev). Kind Regards, Bas
I: using cowbuilder as pbuilder dpkg-checkbuilddeps: Unmet build dependencies: libgsl-dev W: Unmet build-dependency in source dpkg-buildpackage: source package r-cran-gsl dpkg-buildpackage: source version 1.9-10-1.1 dpkg-buildpackage: source distribution UNRELEASED dpkg-buildpackage: source changed by Bas Couwenberg <[email protected]> dpkg-source --before-build r-cran-gsl-1.9-10 dpkg-checkbuilddeps: Unmet build dependencies: libgsl-dev dpkg-buildpackage: warning: build dependencies/conflicts unsatisfied; aborting dpkg-buildpackage: warning: (Use -d flag to override.) dpkg-buildpackage: warning: this is currently a non-fatal warning with -S, but will probably become fatal in the future fakeroot debian/rules clean test -x debian/rules dh_clean if test -d src; then \ find src -regex ".*\.o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status dpkg-source -b r-cran-gsl-1.9-10 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: building r-cran-gsl using existing ./r-cran-gsl_1.9-10.orig.tar.gz dpkg-source: info: building r-cran-gsl in r-cran-gsl_1.9-10-1.1.debian.tar.xz dpkg-source: info: building r-cran-gsl in r-cran-gsl_1.9-10-1.1.dsc dpkg-genchanges -S >../r-cran-gsl_1.9-10-1.1_source.changes dpkg-genchanges: not including original source code in upload dpkg-source --after-build r-cran-gsl-1.9-10 dpkg-buildpackage: binary and diff upload (original source NOT included) -> Copying COW directory forking: rm -rf /var/cache/pbuilder/build//cow.29361 forking: cp -al /var/cache/pbuilder/base-sid.cow /var/cache/pbuilder/build//cow.29361 I: removed stale ilistfile /var/cache/pbuilder/build//cow.29361/.ilist forking: chroot /var/cache/pbuilder/build//cow.29361 cowdancer-ilistcreate /.ilist find . -xdev -path ./home -prune -o \( \( -type l -o -type f \) -a -links +1 -print0 \) | xargs -0 stat --format '%d %i ' -> Invoking pbuilder forking: pbuilder build --debbuildopts --debbuildopts --buildplace /var/cache/pbuilder/build//cow.29361 --buildresult /var/cache/pbuilder/result/ --debbuildopts --no-targz --internal-chrootexec chroot /var/cache/pbuilder/build//cow.29361 cow-shell /home/bas/tmp/debian/r-cran-gsl_1.9-10-1.1.dsc I: Running in no-targz mode I: using fakeroot in build. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 22 21:58:53 CET 2015 I: pbuilder-time-stamp: 1448225933 I: copying local configuration I: mounting /proc filesystem I: mounting /run/shm filesystem I: mounting /dev/pts filesystem I: policy-rc.d already exists I: Obtaining the cached apt archive contents I: Installing the build-deps W: no hooks of type D found -- ignoring -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team <[email protected]> Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 9.0), cdbs, r-base-dev, libgsl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 12439 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 9.0); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on cdbs; however: Package cdbs is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: bsdmainutils{a} ca-certificates{a} cdbs{a} debhelper{a} dh-strip-nondeterminism{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-5{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas-common{a} libblas-dev{a} libblas3{a} libbz2-dev{a} libcairo2{a} libcroco3{a} libcurl3{a} libdatrie1{a} libexpat1{a} libffi6{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran-5-dev{a} libgfortran3{a} libglib2.0-0{a} libgnutls-deb0-28{a} libgraphite2-3{a} libgsl-dev{a} libgsl2{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhogweed4{a} libice6{a} libicu55{a} libidn11{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} liblzma-dev{a} libmagic1{a} libncurses5-dev{a} libnettle6{a} libnghttp2-14{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpng12-0{a} libpng12-dev{a} libreadline-dev{a} libreadline6-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libssl1.0.2{a} libtasn1-6{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtinfo-dev{a} libtk8.6{a} libunistring0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxss1{a} libxt6{a} man-db{a} openssl{a} po-debconf{a} r-base-core{a} r-base-dev{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: autotools-dev bzip2-doc curl krb5-locales libfile-mimeinfo-perl libglib2.0-data libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lynx-cur r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs xml-core 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/88.9 MB of archives. After unpacking 303 MB will be used. Writing extended state information... debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12439 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-4_amd64.deb ... Unpacking groff-base (1.22.3-4) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6_amd64.deb ... Unpacking bsdmainutils (9.0.6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.4.1-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_amd64.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.1.0-7_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-7) ... Selecting previously unselected package libpng12-0:amd64. Preparing to unpack .../libpng12-0_1.2.54-1_amd64.deb ... Unpacking libpng12-0:amd64 (1.2.54-1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../libfreetype6_2.6-2_amd64.deb ... Unpacking libfreetype6:amd64 (2.6-2) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0031_all.deb ... Moving old data out of the way Unpacking ucf (3.0031) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../fonts-dejavu-core_2.35-1_all.deb ... Unpacking fonts-dejavu-core (2.35-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../fontconfig-config_2.11.0-6.3_all.deb ... Unpacking fontconfig-config (2.11.0-6.3) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../libfontconfig1_2.11.0-6.3_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.3) ... Selecting previously unselected package fontconfig. Preparing to unpack .../fontconfig_2.11.0-6.3_amd64.deb ... Unpacking fontconfig (2.11.0-6.3) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.2.1-3_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-3) ... Selecting previously unselected package x11-common. Preparing to unpack .../x11-common_1%3a7.7+12_all.deb ... Unpacking x11-common (1:7.7+12) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../libice6_2%3a1.0.9-1+b1_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-1+b1) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../libpaper1_1.1.24+nmu4_amd64.deb ... Unpacking libpaper1:amd64 (1.1.24+nmu4) ... Selecting previously unselected package libpcrecpp0v5:amd64. Preparing to unpack .../libpcrecpp0v5_2%3a8.35-7.4_amd64.deb ... Unpacking libpcrecpp0v5:amd64 (2:8.35-7.4) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../libsm6_2%3a1.2.2-1+b1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1+b1) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../libssh2-1_1.5.0-2+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.5.0-2+b1) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../libunistring0_0.9.3-5.2+b1_amd64.deb ... Unpacking libunistring0:amd64 (0.9.3-5.2+b1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../libxdmcp6_1%3a1.1.2-1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../libxcb1_1.11.1-1_amd64.deb ... Unpacking libxcb1:amd64 (1.11.1-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.3-1_all.deb ... Unpacking libx11-data (2:1.6.3-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../libx11-6_2%3a1.6.3-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.3-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../libxrender1_1%3a0.9.9-2_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.9-2) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../libxft2_2.3.2-1_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../libxss1_1%3a1.2.2-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.2-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../libjbig0_2.1-3.1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1) ... Selecting previously unselected package libssl1.0.2:amd64. Preparing to unpack .../libssl1.0.2_1.0.2d-3_amd64.deb ... Unpacking libssl1.0.2:amd64 (1.0.2d-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.25-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.25-2) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2_amd64.deb ... Unpacking file (1:5.25-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.6-1_amd64.deb ... Unpacking gettext-base (0.19.6-1) ... Selecting previously unselected package libnettle6:amd64. Preparing to unpack .../libnettle6_3.1.1-4_amd64.deb ... Unpacking libnettle6:amd64 (3.1.1-4) ... Selecting previously unselected package libhogweed4:amd64. Preparing to unpack .../libhogweed4_3.1.1-4_amd64.deb ... Unpacking libhogweed4:amd64 (3.1.1-4) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../libp11-kit0_0.23.1-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.1-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../libtasn1-6_4.7-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.7-2) ... Selecting previously unselected package libgnutls-deb0-28:amd64. Preparing to unpack .../libgnutls-deb0-28_3.3.18-1_amd64.deb ... Unpacking libgnutls-deb0-28:amd64 (3.3.18-1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../libkeyutils1_1.5.9-8_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-8) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../libkrb5support0_1.13.2+dfsg-4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.13.2+dfsg-4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../libk5crypto3_1.13.2+dfsg-4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.13.2+dfsg-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../libkrb5-3_1.13.2+dfsg-4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.13.2+dfsg-4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../libgssapi-krb5-2_1.13.2+dfsg-4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.13.2+dfsg-4) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../libidn11_1.32-3_amd64.deb ... Unpacking libidn11:amd64 (1.32-3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-14+b1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.26.dfsg1-14+b1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-14+b1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.26.dfsg1-14+b1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-2_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.42+dfsg-2) ... Selecting previously unselected package libicu55:amd64. Preparing to unpack .../libicu55_55.1-6_amd64.deb ... Unpacking libicu55:amd64 (55.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.2+zdfsg1-4_amd64.deb ... Unpacking libxml2:amd64 (2.9.2+zdfsg1-4) ... Selecting previously unselected package openssl. Preparing to unpack .../openssl_1.0.2d-3_amd64.deb ... Unpacking openssl (1.0.2d-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../ca-certificates_20150426_all.deb ... Unpacking ca-certificates (20150426) ... Selecting previously unselected package cdbs. Preparing to unpack .../archives/cdbs_0.4.130_all.deb ... Unpacking cdbs (0.4.130) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.46.2-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.46.2-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../libcroco3_0.6.9-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.9-1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.6-1_amd64.deb ... Unpacking gettext (0.19.6-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.18_all.deb ... Unpacking po-debconf (1.0.18) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.53-1_all.deb ... Unpacking libarchive-zip-perl (1.53-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.014-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.014-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.014-1_all.deb ... Unpacking dh-strip-nondeterminism (0.014-1) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20151117_all.deb ... Unpacking debhelper (9.20151117) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../libgfortran3_5.2.1-23_amd64.deb ... Unpacking libgfortran3:amd64 (5.2.1-23) ... Selecting previously unselected package libgfortran-5-dev:amd64. Preparing to unpack .../libgfortran-5-dev_5.2.1-23_amd64.deb ... Unpacking libgfortran-5-dev:amd64 (5.2.1-23) ... Selecting previously unselected package gfortran-5. Preparing to unpack .../gfortran-5_5.2.1-23_amd64.deb ... Unpacking gfortran-5 (5.2.1-23) ... Selecting previously unselected package gfortran. Preparing to unpack .../gfortran_4%3a5.2.1-4_amd64.deb ... Unpacking gfortran (4:5.2.1-4) ... Selecting previously unselected package libblas-common. Preparing to unpack .../libblas-common_1.2.20110419-11_amd64.deb ... Unpacking libblas-common (1.2.20110419-11) ... Selecting previously unselected package libblas3. Preparing to unpack .../libblas3_1.2.20110419-11_amd64.deb ... Unpacking libblas3 (1.2.20110419-11) ... Selecting previously unselected package libblas-dev. Preparing to unpack .../libblas-dev_1.2.20110419-11_amd64.deb ... Unpacking libblas-dev (1.2.20110419-11) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../libbz2-dev_1.0.6-8_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.6-8) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../libpixman-1-0_0.33.4-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.33.4-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../libxcb-render0_1.11.1-1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.11.1-1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../libxcb-shm0_1.11.1-1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.11.1-1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../libcairo2_1.14.4-1_amd64.deb ... Unpacking libcairo2:amd64 (1.14.4-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../libnghttp2-14_1.4.0-2_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.4.0-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../librtmp1_2.4+20150115.gita107cef-1+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20150115.gita107cef-1+b2) ... Selecting previously unselected package libcurl3:amd64. Preparing to unpack .../libcurl3_7.45.0-1+b1_amd64.deb ... Unpacking libcurl3:amd64 (7.45.0-1+b1) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../libdatrie1_0.2.10-1_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.10-1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../libgraphite2-3_1.3.4-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.4-1) ... Selecting previously unselected package libgsl2:amd64. Preparing to unpack .../libgsl2_2.1+dfsg-1_amd64.deb ... Unpacking libgsl2:amd64 (2.1+dfsg-1) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../libgsl-dev_2.1+dfsg-1_amd64.deb ... Unpacking libgsl-dev (2.1+dfsg-1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../libharfbuzz0b_1.0.1-1+b1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (1.0.1-1+b1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../libjpeg62-turbo_1%3a1.4.1-2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.4.1-2) ... Selecting previously unselected package libjpeg62-turbo-dev:amd64. Preparing to unpack .../libjpeg62-turbo-dev_1%3a1.4.1-2_amd64.deb ... Unpacking libjpeg62-turbo-dev:amd64 (1:1.4.1-2) ... Selecting previously unselected package libjpeg-dev. Preparing to unpack .../libjpeg-dev_1%3a1.4.1-2_all.deb ... Unpacking libjpeg-dev (1:1.4.1-2) ... Selecting previously unselected package liblapack3. Preparing to unpack .../liblapack3_3.5.0-5_amd64.deb ... Unpacking liblapack3 (3.5.0-5) ... Selecting previously unselected package liblapack-dev. Preparing to unpack .../liblapack-dev_3.5.0-5_amd64.deb ... Unpacking liblapack-dev (3.5.0-5) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2.1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ... Selecting previously unselected package libtinfo-dev:amd64. Preparing to unpack .../libtinfo-dev_6.0+20151024-2_amd64.deb ... Unpacking libtinfo-dev:amd64 (6.0+20151024-2) ... Selecting previously unselected package libncurses5-dev:amd64. Preparing to unpack .../libncurses5-dev_6.0+20151024-2_amd64.deb ... Unpacking libncurses5-dev:amd64 (6.0+20151024-2) ... Selecting previously unselected package libthai-data. Preparing to unpack .../libthai-data_0.1.23-1_all.deb ... Unpacking libthai-data (0.1.23-1) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../libthai0_0.1.23-1_amd64.deb ... Unpacking libthai0:amd64 (0.1.23-1) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../libpango-1.0-0_1.38.1-1_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.38.1-1) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../libpangoft2-1.0-0_1.38.1-1_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.38.1-1) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../libpangocairo-1.0-0_1.38.1-1_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.38.1-1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../libpaper-utils_1.1.24+nmu4_amd64.deb ... Unpacking libpaper-utils (1.1.24+nmu4) ... Selecting previously unselected package libpcre16-3:amd64. Preparing to unpack .../libpcre16-3_2%3a8.35-7.4_amd64.deb ... Unpacking libpcre16-3:amd64 (2:8.35-7.4) ... Selecting previously unselected package libpcre32-3:amd64. Preparing to unpack .../libpcre32-3_2%3a8.35-7.4_amd64.deb ... Unpacking libpcre32-3:amd64 (2:8.35-7.4) ... Selecting previously unselected package libpcre3-dev:amd64. Preparing to unpack .../libpcre3-dev_2%3a8.35-7.4_amd64.deb ... Unpacking libpcre3-dev:amd64 (2:8.35-7.4) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Selecting previously unselected package libpng12-dev:amd64. Preparing to unpack .../libpng12-dev_1.2.54-1_amd64.deb ... Unpacking libpng12-dev:amd64 (1.2.54-1) ... Selecting previously unselected package libreadline6-dev:amd64. Preparing to unpack .../libreadline6-dev_6.3-8+b3_amd64.deb ... Unpacking libreadline6-dev:amd64 (6.3-8+b3) ... Selecting previously unselected package libreadline-dev:amd64. Preparing to unpack .../libreadline-dev_6.3-8+b3_amd64.deb ... Unpacking libreadline-dev:amd64 (6.3-8+b3) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../libtcl8.6_8.6.4+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.4+dfsg-2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../libtiff5_4.0.5-1_amd64.deb ... Unpacking libtiff5:amd64 (4.0.5-1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../libtk8.6_8.6.4+dfsg-2_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.4+dfsg-2) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../libxt6_1%3a1.1.5-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.5-1) ... Selecting previously unselected package zip. Preparing to unpack .../archives/zip_3.0-11_amd64.deb ... Unpacking zip (3.0-11) ... Selecting previously unselected package unzip. Preparing to unpack .../unzip_6.0-20_amd64.deb ... Unpacking unzip (6.0-20) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../xdg-utils_1.1.1-1_all.deb ... Unpacking xdg-utils (1.1.1-1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../r-base-core_3.2.2-1_amd64.deb ... Unpacking r-base-core (3.2.2-1) ... Selecting previously unselected package r-base-dev. Preparing to unpack .../r-base-dev_3.2.2-1_all.deb ... Unpacking r-base-dev (3.2.2-1) ... Processing triggers for libc-bin (2.19-22) ... Setting up groff-base (1.22.3-4) ... Setting up bsdmainutils (9.0.6) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:amd64 (1.4.1-1) ... Setting up man-db (2.7.5-1) ... Building database of manual pages ... Setting up libexpat1:amd64 (2.1.0-7) ... Setting up libpng12-0:amd64 (1.2.54-1) ... Setting up libfreetype6:amd64 (2.6-2) ... Setting up ucf (3.0031) ... Setting up fonts-dejavu-core (2.35-1) ... Setting up fontconfig-config (2.11.0-6.3) ... Setting up libfontconfig1:amd64 (2.11.0-6.3) ... Setting up fontconfig (2.11.0-6.3) ... Regenerating fonts cache... done. Setting up libffi6:amd64 (3.2.1-3) ... Setting up x11-common (1:7.7+12) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults [....] Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix[?25l7[1G[[32m ok [39;49m8[?12l[?25h. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Creating config file /etc/papersize with new version Setting up libpcrecpp0v5:amd64 (2:8.35-7.4) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libssh2-1:amd64 (1.5.0-2+b1) ... Setting up libunistring0:amd64 (0.9.3-5.2+b1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-1) ... Setting up libxcb1:amd64 (1.11.1-1) ... Setting up libx11-data (2:1.6.3-1) ... Setting up libx11-6:amd64 (2:1.6.3-1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxrender1:amd64 (1:0.9.9-2) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libssl1.0.2:amd64 (1.0.2d-3) ... Setting up libmagic1:amd64 (1:5.25-2) ... Setting up file (1:5.25-2) ... Setting up gettext-base (0.19.6-1) ... Setting up libnettle6:amd64 (3.1.1-4) ... Setting up libhogweed4:amd64 (3.1.1-4) ... Setting up libp11-kit0:amd64 (0.23.1-3) ... Setting up libtasn1-6:amd64 (4.7-2) ... Setting up libgnutls-deb0-28:amd64 (3.3.18-1) ... Setting up libkeyutils1:amd64 (1.5.9-8) ... Setting up libkrb5support0:amd64 (1.13.2+dfsg-4) ... Setting up libk5crypto3:amd64 (1.13.2+dfsg-4) ... Setting up libkrb5-3:amd64 (1.13.2+dfsg-4) ... Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-4) ... Setting up libidn11:amd64 (1.32-3) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14+b1) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14+b1) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2) ... Setting up libicu55:amd64 (55.1-6) ... Setting up libxml2:amd64 (2.9.2+zdfsg1-4) ... Setting up openssl (1.0.2d-3) ... Setting up ca-certificates (20150426) ... Setting up cdbs (0.4.130) ... Setting up libglib2.0-0:amd64 (2.46.2-1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.9-1) ... Setting up gettext (0.19.6-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.18) ... Setting up libarchive-zip-perl (1.53-1) ... Setting up libfile-stripnondeterminism-perl (0.014-1) ... Setting up libgfortran3:amd64 (5.2.1-23) ... Setting up libgfortran-5-dev:amd64 (5.2.1-23) ... Setting up gfortran-5 (5.2.1-23) ... Setting up gfortran (4:5.2.1-4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libblas-common (1.2.20110419-11) ... Setting up libblas3 (1.2.20110419-11) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (1.2.20110419-11) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libbz2-dev:amd64 (1.0.6-8) ... Setting up libpixman-1-0:amd64 (0.33.4-1) ... Setting up libxcb-render0:amd64 (1.11.1-1) ... Setting up libxcb-shm0:amd64 (1.11.1-1) ... Setting up libcairo2:amd64 (1.14.4-1) ... Setting up libnghttp2-14:amd64 (1.4.0-2) ... Setting up librtmp1:amd64 (2.4+20150115.gita107cef-1+b2) ... Setting up libcurl3:amd64 (7.45.0-1+b1) ... Setting up libdatrie1:amd64 (0.2.10-1) ... Setting up libgraphite2-3:amd64 (1.3.4-1) ... Setting up libgsl2:amd64 (2.1+dfsg-1) ... Setting up libgsl-dev (2.1+dfsg-1) ... Setting up libharfbuzz0b:amd64 (1.0.1-1+b1) ... Setting up libjpeg62-turbo:amd64 (1:1.4.1-2) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.4.1-2) ... Setting up libjpeg-dev (1:1.4.1-2) ... Setting up liblapack3 (3.5.0-5) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.5.0-5) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ... Setting up libtinfo-dev:amd64 (6.0+20151024-2) ... Setting up libncurses5-dev:amd64 (6.0+20151024-2) ... Setting up libthai-data (0.1.23-1) ... Setting up libthai0:amd64 (0.1.23-1) ... Setting up libpango-1.0-0:amd64 (1.38.1-1) ... Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... Setting up libpaper-utils (1.1.24+nmu4) ... Setting up libpcre16-3:amd64 (2:8.35-7.4) ... Setting up libpcre32-3:amd64 (2:8.35-7.4) ... Setting up libpcre3-dev:amd64 (2:8.35-7.4) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Setting up libpng12-dev:amd64 (1.2.54-1) ... Setting up libreadline6-dev:amd64 (6.3-8+b3) ... Setting up libreadline-dev:amd64 (6.3-8+b3) ... Setting up libtcl8.6:amd64 (8.6.4+dfsg-2) ... Setting up libtiff5:amd64 (4.0.5-1) ... Setting up libtk8.6:amd64 (8.6.4+dfsg-2) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up zip (3.0-11) ... Setting up unzip (6.0-20) ... Setting up xdg-utils (1.1.1-1) ... Setting up r-base-core (3.2.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-base-dev (3.2.2-1) ... Setting up dh-strip-nondeterminism (0.014-1) ... Setting up debhelper (9.20151117) ... Processing triggers for libc-bin (2.19-22) ... Processing triggers for ca-certificates (20150426) ... Updating certificates in /etc/ssl/certs... 180 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libfakeroot The following NEW packages will be installed: fakeroot libfakeroot debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/129 kB of archives. After this operation, 434 kB of additional disk space will be used. Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17349 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.20.2-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.20.2-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.20.2-1_amd64.deb ... Unpacking fakeroot (1.20.2-1) ... Processing triggers for man-db (2.7.5-1) ... Setting up libfakeroot:amd64 (1.20.2-1) ... Setting up fakeroot (1.20.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode I: Copying back the cached apt archive contents I: Copying source file I: copying [/home/bas/tmp/debian/r-cran-gsl_1.9-10-1.1.dsc] I: copying [/home/bas/tmp/debian/r-cran-gsl_1.9-10.orig.tar.gz] I: copying [/home/bas/tmp/debian/r-cran-gsl_1.9-10-1.1.debian.tar.xz] I: Extracting source dpkg-source: warning: extracting unsigned source package (r-cran-gsl_1.9-10-1.1.dsc) dpkg-source: info: extracting r-cran-gsl in r-cran-gsl-1.9-10 dpkg-source: info: unpacking r-cran-gsl_1.9-10.orig.tar.gz dpkg-source: info: unpacking r-cran-gsl_1.9-10-1.1.debian.tar.xz I: Building the package W: no hooks of type A found -- ignoring I: Running cd tmp/buildd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" dpkg-buildpackage -us -uc -rfakeroot dpkg-buildpackage: source package r-cran-gsl dpkg-buildpackage: source version 1.9-10-1.1 dpkg-buildpackage: source distribution UNRELEASED dpkg-buildpackage: source changed by Bas Couwenberg <[email protected]> dpkg-source --before-build r-cran-gsl-1.9-10 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_clean if test -d src; then \ find src -regex ".*\.o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status dpkg-source -b r-cran-gsl-1.9-10 dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building r-cran-gsl using existing ./r-cran-gsl_1.9-10.orig.tar.gz dpkg-source: info: building r-cran-gsl in r-cran-gsl_1.9-10-1.1.debian.tar.xz dpkg-source: info: building r-cran-gsl in r-cran-gsl_1.9-10-1.1.dsc debian/rules build test -x debian/rules mkdir -p "." fakeroot debian/rules binary test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/site-library echo "R:Depends=r-base-core (>= 3.2.2-1), r-api-3" >> debian/r-cran-gsl.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a \ R CMD INSTALL -l /tmp/buildd/r-cran-gsl-1.9-10/debian/r-cran-gsl/usr/lib/R/site-library --clean \ . \ "--built-timestamp=\"Sun, 22 Nov 2015 21:58:32 +0100\"" \ ; \ else \ R CMD INSTALL -l /tmp/buildd/r-cran-gsl-1.9-10/debian/r-cran-gsl/usr/lib/R/site-library \ --clean . \ "--built-timestamp=\"Sun, 22 Nov 2015 21:58:32 +0100\"" \ ; \ fi * installing *source* package 'gsl' ... ** package 'gsl' successfully unpacked and MD5 sums checked checking for gsl-config... /usr/bin/gsl-config checking if GSL version >= 1.12... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed configure: error: Need GSL version >= 1.12 ERROR: configuration failed for package 'gsl' * removing '/tmp/buildd/r-cran-gsl-1.9-10/debian/r-cran-gsl/usr/lib/R/site-library/gsl' /usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch' failed make: *** [R_any_arch] Error 1 dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit status 2 E: Failed autobuilding of package W: no hooks of type C found -- ignoring I: unmounting dev/pts filesystem I: unmounting run/shm filesystem I: unmounting proc filesystem -> Cleaning COW directory forking: rm -rf /var/cache/pbuilder/build//cow.29361
diff -Nru r-cran-gsl-1.9-10/debian/changelog r-cran-gsl-1.9-10/debian/changelog --- r-cran-gsl-1.9-10/debian/changelog 2014-06-23 12:25:00.000000000 +0200 +++ r-cran-gsl-1.9-10/debian/changelog 2015-11-22 21:58:37.000000000 +0100 @@ -1,3 +1,10 @@ +r-cran-gsl (1.9-10-1.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * Update build dependencies for GSL 2, change libgsl0-dev to libgsl-dev. + + -- Bas Couwenberg <[email protected]> Sun, 22 Nov 2015 21:58:32 +0100 + r-cran-gsl (1.9-10-1) unstable; urgency=low * Initial release (Closes: #752387). diff -Nru r-cran-gsl-1.9-10/debian/control r-cran-gsl-1.9-10/debian/control --- r-cran-gsl-1.9-10/debian/control 2014-06-23 10:58:32.000000000 +0200 +++ r-cran-gsl-1.9-10/debian/control 2015-11-22 21:58:30.000000000 +0100 @@ -6,7 +6,7 @@ Build-Depends: debhelper (>= 9.0), cdbs, r-base-dev, - libgsl0-dev + libgsl-dev Standards-Version: 3.9.5 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-science/packages/R/trunk/packages/r-cran-gsl/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-science/packages/R/trunk/packages/r-cran-gsl/trunk/
-- debian-science-maintainers mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
