Tags 805193 +patch
Thanks
I was able to get aster to build for raspbian stretch (in which I have
imported the updated petsc from debian sid) with the changes in the
attatched debdiff. I have not tried it on any other system. I have not
tested if the resulting packages actually work. I will be uploading this
to raspbian shortly. No intent to NMU in Debian.
The failure in the bug report was fixed by adding an include path. I
added the include path to three different variables. I'm not sure which
of them the build is actually using.
I then ran into another failure, PETSC_DEFAULT_DOUBLE_PRECISION seems to
have dissapeared. I did some googling and found
http://lists.mcs.anl.gov/pipermail/petsc-users/2014-February/020567.html
which seemed to indicate that it should be replaced with
PETSC_DEFAULT_REAL. I did so and got a successful build.
I also ran into and fixed a broken clean target while working on the
package. I forgot to document this in the changelog.
P.S. Trying to build this package as root will break your system's
python-numpy and then fail because of said breakage.
diff -Nru aster-11.5.0+dfsg2/debian/changelog
aster-11.5.0+dfsg2/debian/changelog
--- aster-11.5.0+dfsg2/debian/changelog 2014-08-04 10:18:27.000000000 +0000
+++ aster-11.5.0+dfsg2/debian/changelog 2015-12-11 03:19:31.000000000 +0000
@@ -1,3 +1,10 @@
+aster (11.5.0+dfsg2-3+rpi1) stretch-staging; urgency=medium
+
+ * Force new include path for petsc fortran stuff.
+ * Change PETSC_DEFAULT_DOUBLE_PRECISION to PETSC_DEFAULT_REAL as hinted at
by http://lists.mcs.anl.gov/pipermail/petsc-users/2014-February/020567.html
+
+ -- Peter Michael Green <plugw...@raspbian.org> Fri, 11 Dec 2015 00:53:43
+0000
+
aster (11.5.0+dfsg2-3) unstable; urgency=medium
* Team upload.
diff -Nru aster-11.5.0+dfsg2/debian/patches/0011-petsc-default.patch
aster-11.5.0+dfsg2/debian/patches/0011-petsc-default.patch
--- aster-11.5.0+dfsg2/debian/patches/0011-petsc-default.patch 1970-01-01
00:00:00.000000000 +0000
+++ aster-11.5.0+dfsg2/debian/patches/0011-petsc-default.patch 2015-12-11
03:35:46.000000000 +0000
@@ -0,0 +1,16 @@
+Description: Change PETSC_DEFAULT_DOUBLE_PRECISION to PETSC_DEFAULT_REAL as
hinted at by
http://lists.mcs.anl.gov/pipermail/petsc-users/2014-February/020567.html
+Author: Peter Michael Green <plugw...@raspbian.org>
+
+--- aster-11.5.0+dfsg2.orig/bibfor/petsc/apksp.F90
++++ aster-11.5.0+dfsg2/bibfor/petsc/apksp.F90
+@@ -103,8 +103,8 @@ subroutine apksp(kptsc)
+ endif
+ !
+ rtol = resire
+- atol = PETSC_DEFAULT_DOUBLE_PRECISION
+- dtol = PETSC_DEFAULT_DOUBLE_PRECISION
++ atol = PETSC_DEFAULT_REAL
++ dtol = PETSC_DEFAULT_REAL
+ !
+ call KSPSetTolerances(ksp, rtol, atol, dtol, maxits,&
+ ierr)
diff -Nru aster-11.5.0+dfsg2/debian/patches/series
aster-11.5.0+dfsg2/debian/patches/series
--- aster-11.5.0+dfsg2/debian/patches/series 2014-08-04 10:07:55.000000000
+0000
+++ aster-11.5.0+dfsg2/debian/patches/series 2015-12-11 03:35:26.000000000
+0000
@@ -8,3 +8,4 @@
0008-Disable-BLACS-checks.patch
0009-Fix-NumPy-version-comparison.patch
0010-Check-that-DEST_CPU-exists-before-reading-it.patch
+0011-petsc-default.patch
diff -Nru aster-11.5.0+dfsg2/debian/rules aster-11.5.0+dfsg2/debian/rules
--- aster-11.5.0+dfsg2/debian/rules 2014-08-04 10:13:49.000000000 +0000
+++ aster-11.5.0+dfsg2/debian/rules 2015-12-11 03:01:43.000000000 +0000
@@ -11,6 +11,9 @@
ifneq ($(wildcard
/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/$(ARCH_DEFAULT_MPI_IMPL)/libhdf5.so),)
export DEB_CPPFLAGS_MAINT_APPEND :=
-I/usr/include/hdf5/$(ARCH_DEFAULT_MPI_IMPL)
+ export DEB_FCFLAGS_MAINT_APPEND :=
-I/usr/lib/petscdir/3.6.2/$(DEB_HOST_MULTIARCH)-real/include/petsc/
+ export DEB_FFLAGS_MAINT_APPEND :=
-I/usr/lib/petscdir/3.6.2/$(DEB_HOST_MULTIARCH)-real/include/petsc/
+ export DEB_CFLAGS_MAINT_APPEND :=
-I/usr/lib/petscdir/3.6.2/$(DEB_HOST_MULTIARCH)-real/include/petsc/
export DEB_LDFLAGS_MAINT_APPEND :=
-Wl,-L/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/$(ARCH_DEFAULT_MPI_IMPL)
endif
--
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