Your message dated Fri, 01 Jul 2016 07:21:33 +0000
with message-id <[email protected]>
and subject line Bug#828716: fixed in python-hdf5storage 0.1.13-2
has caused the Debian Bug report #828716,
regarding python-hdf5storage: FTBFS: sphinx.ext.mathjax: other math package is
already loaded
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
828716: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=828716
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: python-hdf5storage
Version: 0.1.13-1
Severity: serious
Justification: fails to build from source
User: [email protected]
Usertags: ftbfs
X-Debbugs-Cc: [email protected]
Dear Maintainer,
python-hdf5storage fails to build from source in unstable/amd64:
[..]
Get:28 http://httpredir.debian.org/debian sid/main amd64 python-sphinx all
1.4.4-2 [427 kB]
Get:29 http://httpredir.debian.org/debian sid/main amd64 python-numpydoc all
0.5-2 [29.5 kB]
Get:30 http://httpredir.debian.org/debian sid/main amd64 python-nose all
1.3.7-1 [132 kB]
Get:31 http://httpredir.debian.org/debian sid/main amd64 python-setuptools
all 20.10.1-1.1 [203 kB]
Get:32 http://httpredir.debian.org/debian sid/main amd64 python-decorator all
4.0.6-1 [12.7 kB]
Get:33 http://httpredir.debian.org/debian sid/main amd64 python-scipy amd64
0.17.1-1 [8684 kB]
Get:34 http://httpredir.debian.org/debian sid/main amd64 python3-all amd64
3.5.1-4 [928 B]
Get:35 http://httpredir.debian.org/debian sid/main amd64 python3-numpy amd64
1:1.11.1~rc1-1 [1772 kB]
Get:36 http://httpredir.debian.org/debian sid/main amd64 python3-six all
1.10.0-3 [14.4 kB]
Get:37 http://httpredir.debian.org/debian sid/main amd64 python3-h5py amd64
2.6.0-1+b1 [498 kB]
Get:38 http://httpredir.debian.org/debian sid/main amd64
python3-pkg-resources all 20.10.1-1.1 [112 kB]
Get:39 http://httpredir.debian.org/debian sid/main amd64 python3-nose all
1.3.7-1 [132 kB]
Get:40 http://httpredir.debian.org/debian sid/main amd64 python3-setuptools
all 20.10.1-1.1 [122 kB]
Get:41 http://httpredir.debian.org/debian sid/main amd64 python3-decorator
all 4.0.6-1 [12.8 kB]
Get:42 http://httpredir.debian.org/debian sid/main amd64 python3-scipy amd64
0.17.1-1 [8290 kB]
Fetched 31.6 MB in 0s (101 MB/s)
Selecting previously unselected package python-all.
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(Reading database ... 23078 files and directories currently installed.)
Preparing to unpack .../python-all_2.7.11-2_amd64.deb ...
Unpacking python-all (2.7.11-2) ...
Selecting previously unselected package libgfortran3:amd64.
Preparing to unpack .../libgfortran3_6.1.1-7_amd64.deb ...
Unpacking libgfortran3:amd64 (6.1.1-7) ...
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Preparing to unpack .../libblas-common_3.6.0-2_amd64.deb ...
Unpacking libblas-common (3.6.0-2) ...
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Preparing to unpack .../libblas3_3.6.0-2_amd64.deb ...
Unpacking libblas3 (3.6.0-2) ...
Selecting previously unselected package liblapack3.
Preparing to unpack .../liblapack3_3.6.0-2_amd64.deb ...
Unpacking liblapack3 (3.6.0-2) ...
Selecting previously unselected package python-numpy.
Preparing to unpack .../python-numpy_1%3a1.11.1~rc1-1_amd64.deb ...
Unpacking python-numpy (1:1.11.1~rc1-1) ...
Selecting previously unselected package libaec0:amd64.
Preparing to unpack .../libaec0_0.3.2-1_amd64.deb ...
Unpacking libaec0:amd64 (0.3.2-1) ...
Selecting previously unselected package libsz2:amd64.
Preparing to unpack .../libsz2_0.3.2-1_amd64.deb ...
Unpacking libsz2:amd64 (0.3.2-1) ...
Selecting previously unselected package libhdf5-10:amd64.
Preparing to unpack .../libhdf5-10_1.8.16+docs-8_amd64.deb ...
Unpacking libhdf5-10:amd64 (1.8.16+docs-8) ...
Selecting previously unselected package python-h5py.
Preparing to unpack .../python-h5py_2.6.0-1+b1_amd64.deb ...
Unpacking python-h5py (2.6.0-1+b1) ...
Selecting previously unselected package python-alabaster.
Preparing to unpack .../python-alabaster_0.7.8-1_all.deb ...
Unpacking python-alabaster (0.7.8-1) ...
Selecting previously unselected package python-babel-localedata.
Preparing to unpack .../python-babel-localedata_2.3.4+dfsg.1-2_all.deb ...
Unpacking python-babel-localedata (2.3.4+dfsg.1-2) ...
Selecting previously unselected package python-tz.
Preparing to unpack .../python-tz_2015.7+dfsg-0.1_all.deb ...
Unpacking python-tz (2015.7+dfsg-0.1) ...
Selecting previously unselected package python-babel.
Preparing to unpack .../python-babel_2.3.4+dfsg.1-2_all.deb ...
Unpacking python-babel (2.3.4+dfsg.1-2) ...
Selecting previously unselected package python-roman.
Preparing to unpack .../python-roman_2.0.0-2_all.deb ...
Unpacking python-roman (2.0.0-2) ...
Selecting previously unselected package sgml-base.
Preparing to unpack .../sgml-base_1.28_all.deb ...
Unpacking sgml-base (1.28) ...
Selecting previously unselected package xml-core.
Preparing to unpack .../xml-core_0.13+nmu2_all.deb ...
Unpacking xml-core (0.13+nmu2) ...
Selecting previously unselected package docutils-common.
Preparing to unpack .../docutils-common_0.12+dfsg-1_all.deb ...
Unpacking docutils-common (0.12+dfsg-1) ...
Selecting previously unselected package python-docutils.
Preparing to unpack .../python-docutils_0.12+dfsg-1_all.deb ...
Unpacking python-docutils (0.12+dfsg-1) ...
Selecting previously unselected package python-imagesize.
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Unpacking python-imagesize (0.7.1-1) ...
Selecting previously unselected package python-markupsafe.
Preparing to unpack .../python-markupsafe_0.23-2+b2_amd64.deb ...
Unpacking python-markupsafe (0.23-2+b2) ...
Selecting previously unselected package python-jinja2.
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Unpacking python-jinja2 (2.8-1) ...
Selecting previously unselected package python-pygments.
Preparing to unpack .../python-pygments_2.1.3+dfsg-1_all.deb ...
Unpacking python-pygments (2.1.3+dfsg-1) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../libjs-jquery_1.12.4-1_all.deb ...
Unpacking libjs-jquery (1.12.4-1) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../libjs-underscore_1.7.0~dfsg-1_all.deb ...
Unpacking libjs-underscore (1.7.0~dfsg-1) ...
Selecting previously unselected package libjs-sphinxdoc.
Preparing to unpack .../libjs-sphinxdoc_1.4.4-2_all.deb ...
Unpacking libjs-sphinxdoc (1.4.4-2) ...
Selecting previously unselected package sphinx-common.
Preparing to unpack .../sphinx-common_1.4.4-2_all.deb ...
Unpacking sphinx-common (1.4.4-2) ...
Selecting previously unselected package python-sphinx.
Preparing to unpack .../python-sphinx_1.4.4-2_all.deb ...
Unpacking python-sphinx (1.4.4-2) ...
Selecting previously unselected package python-numpydoc.
Preparing to unpack .../python-numpydoc_0.5-2_all.deb ...
Unpacking python-numpydoc (0.5-2) ...
Selecting previously unselected package python-nose.
Preparing to unpack .../python-nose_1.3.7-1_all.deb ...
Unpacking python-nose (1.3.7-1) ...
Selecting previously unselected package python-setuptools.
Preparing to unpack .../python-setuptools_20.10.1-1.1_all.deb ...
Unpacking python-setuptools (20.10.1-1.1) ...
Selecting previously unselected package python-decorator.
Preparing to unpack .../python-decorator_4.0.6-1_all.deb ...
Unpacking python-decorator (4.0.6-1) ...
Selecting previously unselected package python-scipy.
Preparing to unpack .../python-scipy_0.17.1-1_amd64.deb ...
Unpacking python-scipy (0.17.1-1) ...
Selecting previously unselected package python3-all.
Preparing to unpack .../python3-all_3.5.1-4_amd64.deb ...
Unpacking python3-all (3.5.1-4) ...
Selecting previously unselected package python3-numpy.
Preparing to unpack .../python3-numpy_1%3a1.11.1~rc1-1_amd64.deb ...
Unpacking python3-numpy (1:1.11.1~rc1-1) ...
Selecting previously unselected package python3-six.
Preparing to unpack .../python3-six_1.10.0-3_all.deb ...
Unpacking python3-six (1.10.0-3) ...
Selecting previously unselected package python3-h5py.
Preparing to unpack .../python3-h5py_2.6.0-1+b1_amd64.deb ...
Unpacking python3-h5py (2.6.0-1+b1) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../python3-pkg-resources_20.10.1-1.1_all.deb ...
Unpacking python3-pkg-resources (20.10.1-1.1) ...
Selecting previously unselected package python3-nose.
Preparing to unpack .../python3-nose_1.3.7-1_all.deb ...
Unpacking python3-nose (1.3.7-1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../python3-setuptools_20.10.1-1.1_all.deb ...
Unpacking python3-setuptools (20.10.1-1.1) ...
Selecting previously unselected package python3-decorator.
Preparing to unpack .../python3-decorator_4.0.6-1_all.deb ...
Unpacking python3-decorator (4.0.6-1) ...
Selecting previously unselected package python3-scipy.
Preparing to unpack .../python3-scipy_0.17.1-1_amd64.deb ...
Unpacking python3-scipy (0.17.1-1) ...
Processing triggers for libc-bin (2.22-12) ...
Processing triggers for man-db (2.7.5-1) ...
Setting up python-all (2.7.11-2) ...
Setting up libgfortran3:amd64 (6.1.1-7) ...
Setting up libblas-common (3.6.0-2) ...
Setting up libblas3 (3.6.0-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide
/usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up liblapack3 (3.6.0-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide
/usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up python-numpy (1:1.11.1~rc1-1) ...
Setting up libaec0:amd64 (0.3.2-1) ...
Setting up libsz2:amd64 (0.3.2-1) ...
Setting up libhdf5-10:amd64 (1.8.16+docs-8) ...
Setting up python-h5py (2.6.0-1+b1) ...
Setting up python-alabaster (0.7.8-1) ...
Setting up python-babel-localedata (2.3.4+dfsg.1-2) ...
Setting up python-tz (2015.7+dfsg-0.1) ...
Setting up python-babel (2.3.4+dfsg.1-2) ...
update-alternatives: using /usr/bin/pybabel-python2 to provide
/usr/bin/pybabel (pybabel) in auto mode
Setting up python-roman (2.0.0-2) ...
Setting up sgml-base (1.28) ...
Setting up xml-core (0.13+nmu2) ...
Setting up python-imagesize (0.7.1-1) ...
Setting up python-markupsafe (0.23-2+b2) ...
Setting up python-jinja2 (2.8-1) ...
Setting up python-pygments (2.1.3+dfsg-1) ...
Setting up libjs-jquery (1.12.4-1) ...
Setting up libjs-underscore (1.7.0~dfsg-1) ...
Setting up libjs-sphinxdoc (1.4.4-2) ...
Setting up sphinx-common (1.4.4-2) ...
Setting up python-nose (1.3.7-1) ...
Setting up python-setuptools (20.10.1-1.1) ...
Setting up python-decorator (4.0.6-1) ...
Setting up python-scipy (0.17.1-1) ...
Setting up python3-all (3.5.1-4) ...
Setting up python3-numpy (1:1.11.1~rc1-1) ...
Setting up python3-six (1.10.0-3) ...
Setting up python3-h5py (2.6.0-1+b1) ...
Setting up python3-pkg-resources (20.10.1-1.1) ...
Setting up python3-nose (1.3.7-1) ...
Setting up python3-setuptools (20.10.1-1.1) ...
Setting up python3-decorator (4.0.6-1) ...
Setting up python3-scipy (0.17.1-1) ...
Processing triggers for sgml-base (1.28) ...
Setting up docutils-common (0.12+dfsg-1) ...
Processing triggers for sgml-base (1.28) ...
Setting up python-docutils (0.12+dfsg-1) ...
update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml
to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to
provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to
provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to
provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to
provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using
/usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide
/usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml
to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to
provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to
provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to
provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to
provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python-sphinx (1.4.4-2) ...
Setting up python-numpydoc (0.5-2) ...
Setting up python-hdf5storage-build-deps (0.1.13-1) ...
Processing triggers for libc-bin (2.22-12) ...
**************************************************************************************
** Environment
**
**************************************************************************************
PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
HOSTNAME=53e0310eb5a5
TERM=xterm
PAGER=more
DISPLAY=:0
DOCKER_IMAGE=lamby-debian-sid
DEB_BUILD_OPTIONS=parallel=9
PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip
HOME=/home/lamby
LOGNAME=lamby
SHLVL=1
PWD=/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13
OLDPWD=/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage
GPG_TTY=/dev/console
QUILT_PATCHES=debian/patches
QUILT_NO_DIFF_INDEX=1
QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index
[email protected]
DEBFULLNAME=Chris Lamb
EDITOR=vim
LESS=-cgiFx4M
BLASTER=A220 I5 D1 H5 P330 T6
_=/usr/bin/env
**************************************************************************************
** Building python-hdf5storage 0.1.13-1 on amd64
**
**************************************************************************************
dpkg-buildpackage -rfakeroot -D -us -uc -b
dpkg-buildpackage: info: source package python-hdf5storage
dpkg-buildpackage: info: source version 0.1.13-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Ghislain Antony Vaillant
<[email protected]>
dpkg-source --before-build python-hdf5storage-0.1.13
dpkg-buildpackage: info: host architecture amd64
fakeroot debian/rules clean
dh clean --with python2,python3,sphinxdoc --buildsystem=pybuild
dh_testdir -O--buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py clean
running clean
removing
'/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_2.7/build'
(and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
I: pybuild base:184: python3.5 setup.py clean
running clean
removing
'/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_3.5/build'
(and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.5' does not exist -- can't clean it
dh_clean -O--buildsystem=pybuild
debian/rules build
dh build --with python2,python3,sphinxdoc --buildsystem=pybuild
dh_testdir -O--buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py config
running config
I: pybuild base:184: python3.5 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory
'/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13'
dh_auto_build
I: pybuild base:184: /usr/bin/python setup.py build
running build
running build_py
creating
/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_2.7/build/hdf5storage
copying hdf5storage/__init__.py ->
/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_2.7/build/hdf5storage
copying hdf5storage/lowlevel.py ->
/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_2.7/build/hdf5storage
copying hdf5storage/utilities.py ->
/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_2.7/build/hdf5storage
copying hdf5storage/Marshallers.py ->
/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_2.7/build/hdf5storage
I: pybuild base:184: /usr/bin/python3 setup.py build
running build
running build_py
creating
/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_3.5/build/hdf5storage
copying hdf5storage/__init__.py ->
/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_3.5/build/hdf5storage
copying hdf5storage/lowlevel.py ->
/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_3.5/build/hdf5storage
copying hdf5storage/utilities.py ->
/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_3.5/build/hdf5storage
copying hdf5storage/Marshallers.py ->
/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13/.pybuild/pythonX.Y_3.5/build/hdf5storage
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc/source
build/html
Running Sphinx v1.4.4
making output directory...
WARNING: sphinx.ext.pngmath has been deprecated. Please use
sphinx.ext.imgmath instead.
Extension error:
sphinx.ext.mathjax: other math package is already loaded
debian/rules:14: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 1
make[1]: Leaving directory
'/home/lamby/temp/cdt.20160627075546.TwGD1OkcVX.python-hdf5storage/python-hdf5storage-0.1.13'
debian/rules:11: recipe for target 'build' failed
make: *** [build] Error 2
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
python-hdf5storage.0.1.13-1.unstable.amd64.log.txt.gz
Description: Binary data
--- End Message ---
--- Begin Message ---
Source: python-hdf5storage
Source-Version: 0.1.13-2
We believe that the bug you reported is fixed in the latest version of
python-hdf5storage, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Ghislain Antony Vaillant <[email protected]> (supplier of updated
python-hdf5storage package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 30 Jun 2016 17:19:04 +0100
Source: python-hdf5storage
Binary: python-hdf5storage python3-hdf5storage python-hdf5storage-doc
Architecture: source
Version: 0.1.13-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Ghislain Antony Vaillant <[email protected]>
Description:
python-hdf5storage - high-level utilities to read from and write to HDF5
(Python 2)
python-hdf5storage-doc - documentation for hdf5storage
python3-hdf5storage - high-level utilities to read from and write to HDF5
(Python 3)
Closes: 828716
Changes:
python-hdf5storage (0.1.13-2) unstable; urgency=medium
.
* Add patch dropping usage of deprecated pngmath sphinx extension.
Thanks to Chris Lamb (Closes: #828716)
* d/{clean,rules}: cleanup and formatting.
* Bump Standards-Version to 3.9.8, no changes required.
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