found by argument-dependent lookup at the point of instantiation [-fpermissive]
> In file included from 
> /tmp/buildd/cctbx-2012.05.08.2305/cctbx_sources/mmtbx/bulk_solvent/bulk_solvent_ext.cpp:7:0:
> /tmp/buildd/cctbx-2012.05.08.2305/cctbx_sources/mmtbx/bulk_solvent/bulk_solvent.h:935:1:
>  note: 'template<class FloatType, class ComplexType> FloatType 
> mmtbx::bulk_solvent::r_factor(const scitbx::af::const_ref<ElementType>&, 
> const scitbx::af::const_ref<std::complex<_Up> >&, const 
> scitbx::af::const_ref<std::complex<_Up> >&, const FloatType&, const 
> FloatType&)' declared here, later in the translation unit


So f-factor is used before it was declare in the .h file.
so you should move thoses templates method before using them in the code.

maybe you compiled this with gcc < 4.7

check if it solve the problem and prepare a patch for the upstream with gbp-pq 
:)

I usually give them a name like 000x_upstream_xxxx

> warning: "BOOST_DISABLE_THREADS" redefined [enabled by default]

we should DFSG free from the local boost library and start implementing the 
--use-system-libraries.


See you

Frederic

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