Returning a few weeks later: CRAN packages. r-cran-adegraphics: r-cran-surveillance:
waiting for r-cran-spdep r-cran-afex: run-unit-test script hides output, so you don't see what goes wrong missing test dependency on r-cran-dplyr missing test dependency on mlmrev (not packaged) for the "conception" dataset r-cran-bbmisc: r-cran-futile.logger These have R-level errors in the test suites which I can't obviously understand the causes of. r-cran-doparallel fixed the run-unit-test in SVN not to hide output, which reveals: missing test dependency on r-cran-caret missing test dependency on mlbench (unpackaged) attempts to write a summary to the (read-only) package installation directory - this is hard-coded in doRUnit.R and probably needs a patch r-cran-hexbin run-unit-test tries to run R extracted from the vignette (fails due to missing unpackaged dependency marray), but doesn't run test/*.R (which should succeed) the package doesn't actually install run-unit-test or test/* r-cran-matrixstats Vcs-Browser link is broken Fixed in SVN an error in run-unit-test (directories in test/) - should (hopefully) now work r-cran-msm the errors are fixed by upgrading to 1.6.1 (tested) r-cran-sp missing test dependency rgeos Addendum: I'm not very familiar with svn-buildpackage; I use the following gbp-buildpackage ~/.gbp.conf to build and run tests using an schroot; does anyone have an equivalent for svn-buildpackage? ---8<--- [buildpackage] builder = sbuild --no-clean-source --arch-all --source --force-orig-source export-dir = ../build-area/ posbuild = adt-run --changes $GBP_CHANGES_FILE --- adt-virt-schroot unstable-amd64-sbuild ---8<--- (this does end up entering and installing packages in the chroot twice, which is a bit annoying, but it at least ensures a clean environment each time) Gordon On 15/05/16 13:09, Andreas Tille wrote: > On Sat, May 14, 2016 at 03:56:40PM +0200, Andreas Tille wrote: >>> >>> Patch (git format-patch for the repository) is attached. It >>> suppress_test_writing_to_usr.patch, which removed some of the pre-amble >>> to each vignette with one which modifies the paths the vignettes check >>> for their data files. They should now build, but the example data has to >>> be copied to the pwd (run-unit-test has been updated to do this). >> >> I'll check the patch soon. Upgrade of the package is pending anyway but >> there are some missing preconditions for the new version. > > Patch commited to Git, waiting for preconditions for new version. > >>>>> r-bioc-limma >>>>> ------------ >>>>> >>>>> Compared stdout of the test script to a saved copy. It's probably >>>>> sufficient to just run the script and test the exit code, since this >>>>> seems to fail on trivial differences. >>>> >>>> I might have a look. Needs to be updated anyway. >>> >>> Attached a replacement run-unit-test script which does this. >> >> I'll check this out. > > Patch commited to Git. Will upload it with new upstream version. > >>> In addition, a re-do of the r-bioc-snpstats run-unit-test is attached >>> (three vignettes should be blacklisted, but the current script only gets >>> two of them). >> >> I'll check soon. > > The patch was working around a missing r-cran-hexbin. I've just > uploaded r-cran-hexbin and ftpmaster seems to have become very speedy > with r-cran packages so this is available now. > > So I think we could stick to the old test, right? > > Kind regards > > Andreas. >
