On 7/29/20 5:18 PM, Anton Gladky wrote:
Hi,
uploaded yesterday. Now it is waiting for review in NEW queue.
hi Anton
yes, I saw the email message. thank you so much for the help!
Qianqian
Best regards
Anton
Am Mo., 27. Juli 2020 um 22:15 Uhr schrieb Qianqian Fang
<[email protected] <mailto:[email protected]>>:
On 7/22/20 4:33 PM, Anton Gladky wrote:
> I currently have "|Testsuite: autopkgtest-pkg-python|" in
control and "|export PYBUILD_TEST_ARGS=test/|" in rules, the CI
pipeline seems to be ok with autopkgtest for pybj
Ah, OK. I missed it.
Please fix the binary inclusion (do not forget to rename the
tarball then).
hi Anton
I noticed that although the auto-test did run for the pyjdata
package, it reported 0 test. I migrated my test unit to use
unittest, and now it runs properly.
to make this update, I created a new upstream release (v0.3.6),
and imported it to salsa, see new commits here
https://salsa.debian.org/science-team/pyjdata/-/commits/master
let em know if you see anything else worth fixing.
Qianqian
Best regards
Anton
Am Mi., 22. Juli 2020 um 01:41 Uhr schrieb Qianqian Fang
<[email protected] <mailto:[email protected]>>:
On 7/21/20 4:39 PM, Anton Gladky wrote:
Hi Qianqian,
some general notes to both packages:
thanks, see my below updates
- Please go through ALL files and put licenses/copyrights
into the d/copyright.
done
- Remove python2-binaries. This python version is not
supported any more.
done
- Remove all binaries from the code (ods-files)
forgive me, what are ods-files?
- pysdate - empty clean file is not needed
removed.
- Add DEP-8 autopkgstests
can you point me to an example project how this is done?
I currently have "|Testsuite: autopkgtest-pkg-python|" in
control and "|export PYBUILD_TEST_ARGS=test/|" in rules, the
CI pipeline seems to be ok with autopkgtest for pybj
https://salsa.debian.org/science-team/pybj/-/pipelines/158112
for pyjdata, two tests were failed due to the dependency to
python3-bjdata (which I believe can be fixed once both
packages are uploaded)
https://salsa.debian.org/science-team/pyjdata/-/pipelines/158115
Please pay attention, I did not compile and test your
packages. Please fix all lintian
errors and warnings, if they exist.
most of those should have been fixed, let me know if you see
something that worth fixing.
thanks
Qianqian
Best regards
Anton
Am Fr., 17. Juli 2020 um 17:34 Uhr schrieb Qianqian Fang
<[email protected] <mailto:[email protected]>>:
hi Anton
just to let you know that I've fixed the numpy-abi error
for pybj
https://salsa.debian.org/science-team/pybj/-/commit/818484c1eb462fa1abd80951132a95dcd048641d
https://mentors.debian.net/package/pybj
I also updated pyjdata dependency list:
https://mentors.debian.net/package/pyjdata
let me know if you have any additional questions
regarding these two packages.
Qianqian
On 7/14/20 6:07 PM, Qianqian Fang wrote:
On 7/14/20 5:11 PM, Anton Gladky wrote:
Hi.
Thanks for your contribution to Debian. I have just
some doubts about
usefulness for Debian and possible popularity of those
two projects.
hi Anton
thanks for your comment. happy to explain. Changed
message title from "JSON/..." to "JData/BJData encoders
and decoders" to avoid further confusions.
see my self-introduction in a previous thread
https://lists.debian.org/debian-science/2020/06/msg00006.html
https://bugs.debian.org/cgi-bin/pkgreport.cgi?submitter=fangqq%40gmail.com
I am working on packaging a number research software
produced from my lab and research projects. I have
already submitted 5 octave-related projects, mentored
by Rafael Laboissière (CCed) via the Debian Octave
Group. I intend to maintain these packages in the
future (already doing so for Fedora).
These two python modules are part of a bigger project
that I initiated last year (http://openjdata.org). They
allow python users to read/write JData-annotated data
files produced by my MATLAB toolbox JSONLab
(https://github.com/fangq/jsonlab , about 46000
downloads on Matlab file exchange and ~1000 clones/week
on github). This work is partly funded by my NIH
(National Institute of Health) grants and broader
dissemination is part of the project goals.
Do you know how many people can be interested in these
two libraries?
It looks like at least one of them duplicates the
functionality of the built-in
JSON module. Could you please shortly describe the
benefits of both
of them before we start to evaluate it technically?
The *python-bjdata* project was extended from
*python-ubjson* - an existing Debian package.
Unfortunately, the UBJSON spec (http://ubjson.org),
despite being broadly used, is no longer actively
maintained. I started a fork earlier this year to
continue the development of this specification, and
python-bjdata is a parser that is compliant to the
BJData spec.
The jdata/bjdata framework is not a duplication to JSON
- instead, it defines a systematic way to encode basic
data structures into JSON/UBJSON/BJData serializable forms.
The detailed specifications, examples and rationales
can be found at
http://openjdata.org/wiki/
in a way, the jdata module is similar to *json-tricks*
but aimed at a more systematic/standardized way to
annotate complex data (such as graphs, maps, ND arrays
...) for sharing, exchange and reuse.
https://packages.debian.org/buster/python/python3-json-tricks
the bjdata module is a binary JSON format (similar to
UBJSON, and msgpack) to store binary and strongly typed
hierarchical data. The differences are highlighted in
this github tracker
https://github.com/ubjson/universal-binary-json/issues/109
Although these two modules were recently developed, we
are beginning to integrate those in my other tools
including *iso2mesh* <http://iso2mesh.sf.net/>,
*jsonlab* <http://openjdata.org/jsonlab> and *mcx*
<http://mcx.space/> (~10,000 registered users
combined). So packaging and maintaining these tools
will greatly facilitate the data exchange among the
user communities.
let me know if I can provide any additional explanations.
thanks
Qianqian
Best regards
Anton
Am Di., 14. Juli 2020 um 06:35 Uhr schrieb Qianqian
Fang <[email protected] <mailto:[email protected]>>:
Dear Science team,
I just submitted two python module packages and
wonder if anyone is
willing to take a look and sponsor these packages
The python-jdata and python-bjdata packages aim to
enable sharing python
data with other programming environments (like
MATLAB, C/C++) via
JSON/binary JSON encoded data files (i.e. the
JData/Binary JData
specifications).
The RFS and mentors links can be found in the
below two links
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=964993
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=964994
both packaging files can be found at
https://salsa.debian.org/science-team/pybj
https://salsa.debian.org/science-team/pyjdata
Also need some input on removing the
missing-dependency-on-numpy-abi error.
thanks
Qianqian
