Hi, Le jeudi 13 mars 2025 à 10:04 +0100, PICCA Frederic-Emmanuel a écrit : > Hello, I am working on the astra-toolbox > > which provide an octave package like this > > octave-astra-toolbox_2.3.0-1_amd64.deb > -------------------------------------- > > new Debian package, version 2.0. > size 1075888 bytes: control archive=2980 bytes. > 947 bytes, 23 lines control > 6663 bytes, 73 lines md5sums > 43 bytes, 1 lines shlibs > 68 bytes, 2 lines triggers > Package: octave-astra-toolbox > Source: astra-toolbox > Version: 2.3.0-1 > Architecture: amd64 > Maintainer: Debian Science Maintainers > <debian-science-maintain...@lists.alioth.debian.org> > Installed-Size: 9905 > Depends: libc6 (>= 2.32), libcudart12, libcufft11, libgcc-s1 (>= 3.0), > libstdc++6 (>= 13.1), octave-abi-59, octave (>= 9.4.0) > Section: contrib/python > Priority: optional > Homepage: https://github.com/astra-toolbox/astra-toolbox > Description: toolbox of high-performance GPU primitives for 2D and 3D > tomography (octave) > It supports 2D parallel and fan beam geometries, and 3D parallel and > cone beam. All of them have highly flexible source/detector > positioning. > . > A large number of 2D and 3D algorithms are available, including FBP, > SIRT, SART, CGLS. > . > The basic forward and backward projection operations are > GPU-accelerated, and directly callable from Octave and Python to > enable building new algorithms. > . > This is the Octave library. > > drwxr-xr-x root/root 0 2025-03-12 11:54 ./ > drwxr-xr-x root/root 0 2025-03-12 11:54 ./usr/ > drwxr-xr-x root/root 0 2025-03-12 11:54 ./usr/lib/ > drwxr-xr-x root/root 0 2025-03-12 11:54 ./usr/lib/astra/ > drwxr-xr-x root/root 0 2025-03-12 11:54 ./usr/lib/astra/mex/ > drwxr-xr-x root/root 0 2025-03-12 11:54 ./usr/lib/astra/mex/octave/ > drwxr-xr-x root/root 0 2025-03-12 11:54 > ./usr/lib/astra/mex/octave/mex/ > -rwxr-xr-x root/root 100536 2025-03-12 11:54 > ./usr/lib/astra/mex/octave/mex/astra_mex_algorithm_c.mex > -rwxr-xr-x root/root 75960 2025-03-12 11:54 > ./usr/lib/astra/mex/octave/mex/astra_mex_c.mex > -rwxr-xr-x root/root 92344 2025-03-12 11:54 > ./usr/lib/astra/mex/octave/mex/astra_mex_data2d_c.mex > -rwxr-xr-x root/root 84152 2025-03-12 11:54 > ./usr/lib/astra/mex/octave/mex/astra_mex_data3d_c.mex > -rwxr-xr-x root/root 75960 2025-03-12 11:54 > ./usr/lib/astra/mex/octave/mex/astra_mex_direct_c.mex > -rwxr-xr-x root/root 75960 2025-03-12 11:54 > ./usr/lib/astra/mex/octave/mex/astra_mex_log_c.mex > -rwxr-xr-x root/root 80056 2025-03-12 11:54 > ./usr/lib/astra/mex/octave/mex/astra_mex_matrix_c.mex > -rwxr-xr-x root/root 75960 2025-03-12 11:54 > ./usr/lib/astra/mex/octave/mex/astra_mex_projector3d_c.mex > -rwxr-xr-x root/root 88248 2025-03-12 11:54 > ./usr/lib/astra/mex/octave/mex/astra_mex_projector_c.mex > -rw-r--r-- root/root 9215048 2025-03-12 11:54 > ./usr/lib/astra/mex/octave/mex/libastra.so.0 > drwxr-xr-x root/root 0 2025-03-12 11:54 ./usr/share/ > drwxr-xr-x root/root 0 2025-03-12 11:54 ./usr/share/doc/ > drwxr-xr-x root/root 0 2025-03-12 11:54 > ./usr/share/doc/octave-astra-toolbox/ > -rw-r--r-- root/root 1384 2025-03-12 11:54 > ./usr/share/doc/octave-astra-toolbox/changelog.Debian.gz > -rw-r--r-- root/root 5786 2025-03-12 11:54 > ./usr/share/doc/octave-astra-toolbox/copyright > drwxr-xr-x root/root 0 2025-03-12 11:54 ./usr/share/lintian/ > drwxr-xr-x root/root 0 2025-03-12 11:54 ./usr/share/lintian/overrides/ > -rw-r--r-- root/root 93 2025-03-12 11:54 > ./usr/share/lintian/overrides/octave-astra-toolbox > drwxr-xr-x root/root 0 2025-03-12 11:54 ./usr/share/octave/ > drwxr-xr-x root/root 0 2025-03-12 11:54 ./usr/share/octave/packages/ > drwxr-xr-x root/root 0 2025-03-12 11:54 > ./usr/share/octave/packages/astra/ > drwxr-xr-x root/root 0 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/ > -rw-r--r-- root/root 381 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/ROIselectfull.m > -rw-r--r-- root/root 1661 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_add_noise_to_sino.m > -rw-r--r-- root/root 842 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_clear.m > -rw-r--r-- root/root 1852 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_create_backprojection.m > -rw-r--r-- root/root 1689 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_create_backprojection3d_cuda.m > -rw-r--r-- root/root 1705 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_create_backprojection_cuda.m > -rw-r--r-- root/root 807 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_create_fbp_reconstruction.m > -rw-r--r-- root/root 9690 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_create_proj_geom.m > -rw-r--r-- root/root 1964 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_create_projector.m > -rw-r--r-- root/root 3043 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_create_reconstruction.m > -rw-r--r-- root/root 2792 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_create_reconstruction_cuda.m > -rw-r--r-- root/root 1837 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_create_sino.m > -rw-r--r-- root/root 1797 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_create_sino3d_cuda.m > -rw-r--r-- root/root 1787 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_create_sino_cuda.m > -rw-r--r-- root/root 1785 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_create_sino_gpu.m > -rw-r--r-- root/root 1846 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_create_sino_sampling.m > -rw-r--r-- root/root 4161 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_create_vol_geom.m > -rw-r--r-- root/root 15477 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_data_gui.m > -rw-r--r-- root/root 304 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_data_op.m > -rw-r--r-- root/root 341 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_data_op_mask.m > -rw-r--r-- root/root 1516 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_downsample_sinogram.m > -rw-r--r-- root/root 4532 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_geom_2vec.m > -rw-r--r-- root/root 1944 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_geom_postalignment.m > -rw-r--r-- root/root 1542 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_geom_size.m > -rw-r--r-- root/root 716 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_geom_superresolution.m > -rw-r--r-- root/root 7233 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_geom_visualize.m > -rw-r--r-- root/root 725 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_get_gpu_info.m > -rw-r--r-- root/root 155 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_imshow.m > -rw-r--r-- root/root 887 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_mex.m > -rw-r--r-- root/root 937 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_mex_algorithm.m > -rw-r--r-- root/root 922 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_mex_data2d.m > -rw-r--r-- root/root 922 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_mex_data3d.m > -rw-r--r-- root/root 922 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_mex_direct.m > -rw-r--r-- root/root 1286 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_mex_log.m > -rw-r--r-- root/root 922 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_mex_matrix.m > -rw-r--r-- root/root 922 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_mex_plugin.m > -rw-r--r-- root/root 937 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_mex_projector.m > -rw-r--r-- root/root 947 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_mex_projector3d.m > -rw-r--r-- root/root 4456 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_plot_geom.m > -rw-r--r-- root/root 866 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_projector_handle.m > -rw-r--r-- root/root 836 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_set_directory.m > -rw-r--r-- root/root 669 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_set_gpu_index.m > -rw-r--r-- root/root 1156 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_struct.m > -rw-r--r-- root/root 743 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_test.m > -rw-r--r-- root/root 1498 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_test_CUDA.m > -rw-r--r-- root/root 1036 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/astra_test_noCUDA.m > -rw-r--r-- root/root 656 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/compute_rnmp.m > -rw-r--r-- root/root 1972 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/createOrderART.m > -rw-r--r-- root/root 269 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/downsample_sinogram.m > -rw-r--r-- root/root 844 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/imreadgs.m > -rw-r--r-- root/root 899 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/imresize3D.m > -rw-r--r-- root/root 817 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/imscale.m > -rw-r--r-- root/root 754 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/imwritesc.m > -rw-r--r-- root/root 970 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/kaiserBessel.m > -rw-r--r-- root/root 803 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/linspace2.m > -rw-r--r-- root/root 9397 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/opTomo.m > -rw-r--r-- root/root 897 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/opTomo_helper_handle.m > -rw-r--r-- root/root 1022 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/overlayImage.m > -rw-r--r-- root/root 3337 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/rebin_fan2par.m > -rw-r--r-- root/root 1100 2025-03-12 11:54 > ./usr/share/octave/packages/astra/tools/sliceExtractor.m > > > I am using autopkgtest-pkg-octave, but I end up with this error message. > > > autopkgtest [09:52:02]: test command1: DH_OCTAVE_TEST_ENV="xvfb-run -a" > /usr/bin/dh_octave_check --use-installed-package > autopkgtest [09:52:02]: test command1: [----------------------- > grep: DESCRIPTION: No such file or directory > Checking package... > find: ‘inst/’: No such file or directory > Run the unit tests... > Checking m files ... > error: package is not installed > error: called from > load_packages at line 47 column 7 > pkg at line 639 column 7 > /tmp/tmp.ZxsbT9NkN7 at line 12 column 1 > > > Is it possible to help me fix this issue.
Fundamentally, the issue is that dh_octave_autopkgtest has been designed to work with Octave add-ons that follow a specific standardized layout. It seems that astra-toolbox does not follow that layout, hence the crash. Maybe is it possible to make dh_octave_autopkgtest work with astra- toolbox with some hack, but my impression is that you will be better- off designing your own custom autopkgtest rather than relying on the standard Octave tooling. I’m CCing the Debian Octave Group list in case someone there has a better hint. Best, -- ⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot ⣾⠁⢠⠒⠀⣿⡁ Debian Developer ⢿⡄⠘⠷⠚⠋⠀ https://sebastien.villemot.name ⠈⠳⣄⠀⠀⠀⠀ https://www.debian.org
