Package: wnpp Severity: wishlist Owner: Olivier Sallou <[email protected]>
* Package name : cassiopee Version : 1.0.0 Upstream Author : Olivier Sallou <[email protected]> * URL : https://github.com/osallou/cassiopee-c * License : MIT Programming Lang: C++ Description : index and search tool in genomic sequences Cassiopee index and search library C implementation. It is a complete rewrite of the ruby Cassiopee gem. It scans an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions. This program provides both a binary (Cassiopee) and a shared library. Index is based on a suffix tree with compression. It is possible to save the indexed sequence for later use without the need to reindex the whole sequence (for large data sets). -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: https://lists.debian.org/[email protected]
