Your message dated Fri, 27 Mar 2020 20:14:08 +0000
with message-id <e1jhvmm-000hmz...@fasolo.debian.org>
and subject line Bug#954942: fixed in chip-seq 1.5.5-1
has caused the Debian Bug report #954942,
regarding ITP: chip-seq -- tools performing common ChIP-Seq data analysis tasks
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
954942: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=954942
Debian Bug Tracking System
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Subject: ITP: chip-seq -- tools performing common ChIP-Seq data analysis tasks
Package: wnpp
Owner: Andreas Tille <ti...@debian.org>
Severity: wishlist
* Package name : chip-seq
Version : 1.5.5
Upstream Author : Giovanna Ambrosini and René Dreos and Sunil Kumar and
Philipp Bucher
* URL : https://ccg.epfl.ch//chipseq
* License : GPL-3+
Programming Lang: C
Description : tools performing common ChIP-Seq data analysis tasks
The ChIP-Seq software provides a set of tools performing common genome-
wide ChIP- seq analysis tasks, including positional correlation
analysis, peak detection, and genome partitioning into signal-rich and
signal-poor regions. These tools exist as stand-alone C programs and
perform the following tasks:
.
1. Positional correlation analysis and generation of an aggregation
plot (AP) (chipcor),
2. Extraction of specific genome annotation features around reference
anchor points (chipextract),
3. Read centering or shifting (chipcenter),
4. Narrow peak caller using a fixed width peak size (chippeak),
5. Broad peak caller used for large regions of enrichment (chippart),
6. Feature selection tool based on a read count threshold (chipscore).
.
Because the ChIP-Seq tools are primarily optimized for speed, they use
their own compact format for ChIP-seq data representation called SGA
(Simplified Genome Annotation). SGA is a line-oriented, tab-delimited
plain text format.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/chip-seq
--- End Message ---
--- Begin Message ---
Source: chip-seq
Source-Version: 1.5.5-1
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
chip-seq, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 954...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated chip-seq package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 25 Mar 2020 17:25:12 +0100
Source: chip-seq
Binary: chip-seq chip-seq-data chip-seq-dbgsym
Architecture: source all amd64
Version: 1.5.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
chip-seq - tools performing common ChIP-Seq data analysis tasks
chip-seq-data - tools performing common ChIP-Seq data analysis tasks (data)
Closes: 954942
Changes:
chip-seq (1.5.5-1) unstable; urgency=medium
.
* Initial release (Closes: #954942)
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chip-seq_1.5.5-1.debian.tar.xz
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chip-seq-data_1.5.5-1_all.deb
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