Package: wnpp Severity: wishlist Subject: ITP: presto -- REpertoire Sequencing TOolkit Package: wnpp Owner: Andreas Tille <ti...@debian.org> Severity: wishlist
* Package name : presto Version : 0.6.0 Upstream Author : Kleinstein Lab, Yale University * URL : https://presto.readthedocs.io/ * License : AGPL-3 Programming Lang: Python Description : REpertoire Sequencing TOolkit pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires. . Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/presto
