Your message dated Thu, 04 Jan 2024 19:00:10 +0000
with message-id <e1rlsws-000920...@fasolo.debian.org>
and subject line Bug#1055593: fixed in bifrost 1.3.0-1
has caused the Debian Bug report #1055593,
regarding ITP: bifrost -- parallel construction, indexing and querying of de
Bruijn graphs
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1055593: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1055593
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Subject: ITP: bifrost -- parallel construction, indexing and querying of de
Bruijn graphs
Package: wnpp
Owner: Andreas Tille <ti...@debian.org>
Severity: wishlist
* Package name : bifrost
Version : 1.3.0
Upstream Author : Pall Melsted, Guillaume Holley
* URL : https://github.com/pmelsted/bifrost
* License : BSD-2-clause
Programming Lang: C
Description : parallel construction, indexing and querying of de Bruijn
graphs
Bifrost is a command-line tool for sequencing that features a broad
range of functions, such as indexing, editing, and querying the graph,
and includes a graph coloring method that maps each k-mer of the graph
to the genomes it occurs in.
.
* Build, index, color and query the compacted de Bruijn graph
* No need to build the uncompacted de Bruijn graph
* Reads or assembled genomes as input
* Output graph in GFA (can be visualized with Bandage), FASTA or binary
* Graph cleaning: short tip clipping, etc.
* Multi-threaded
* No parameters to estimate with other tools
* Exact or approximate k-mer search of queries
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/bifrost
--- End Message ---
--- Begin Message ---
Source: bifrost
Source-Version: 1.3.0-1
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
bifrost, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1055...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated bifrost package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 08 Nov 2023 19:53:14 +0100
Source: bifrost
Binary: bifrost bifrost-dbgsym libbifrost-dev libbifrost0 libbifrost0-dbgsym
Architecture: source amd64
Version: 1.3.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
bifrost - parallel construction, indexing and querying of de Bruijn graphs
libbifrost-dev - static library and header files for libbifrost
libbifrost0 - library for parallel construction, indexing and querying of de Br
Closes: 1055593
Changes:
bifrost (1.3.0-1) unstable; urgency=medium
.
* Initial release (Closes: #1055593)
Checksums-Sha1:
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b19243ad4d6e95f6ac0fe15fc534f52ff07bcdc9 252920 bifrost_1.3.0-1.debian.tar.xz
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bifrost-dbgsym_1.3.0-1_amd64.deb
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libbifrost-dev_1.3.0-1_amd64.deb
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libbifrost0-dbgsym_1.3.0-1_amd64.deb
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Checksums-Sha256:
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bifrost-dbgsym_1.3.0-1_amd64.deb
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Files:
299a60a341ef0ddf787c2ffee161767b 2099 python optional bifrost_1.3.0-1.dsc
006304debd98bfb2d6087091609b1404 349405 python optional
bifrost_1.3.0.orig.tar.gz
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bifrost_1.3.0-1.debian.tar.xz
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bifrost-dbgsym_1.3.0-1_amd64.deb
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bifrost_1.3.0-1_amd64.buildinfo
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bifrost_1.3.0-1_amd64.deb
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libbifrost-dev_1.3.0-1_amd64.deb
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libbifrost0-dbgsym_1.3.0-1_amd64.deb
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libbifrost0_1.3.0-1_amd64.deb
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--- End Message ---
