Hi Sébastien, When running Ray(1.6.1), I met a similar problem mentioned in the earlier post: http://sourceforge.net/mailarchive/message.php?msg_id=27844916
I tried K-mer=21 / 31, each time has the same error message and it stopped after generating one CORE file: [q27:12717] *** Process received signal *** [q27:12717] Signal: Segmentation fault (11) [q27:12717] Signal code: Address not mapped (1) [q27:12717] Failing at address: 0xaec70 [q27:12717] [ 0] /lib64/libpthread.so.0() [0x307ea0f490] [q27:12717] [ 1] Ray(_ZNK4Read6lengthEv+0) [0x4657e0] [q27:12717] [ 2] Ray(_ZN16MessageProcessor33call_RAY_MPI_TAG_GET_READ_MARKERSEP7Message+0x9f) [0x431d0f] [q27:12717] [ 3] Ray(_ZN7Machine10runVanillaEv+0xdf) [0x444e9f] [q27:12717] [ 4] Ray(_ZN7Machine5startEv+0xe7d) [0x4477cd] [q27:12717] [ 5] Ray(main+0x3a) [0x49eeaa] [q27:12717] [ 6] /lib64/libc.so.6(__libc_start_main+0xfd) [0x307de1ec9d] [q27:12717] [ 7] Ray() [0x424619] [q27:12717] *** End of error message *** ------ system setting: Rank 0: Ray version: 1.6.1 Rank 0 MAXKMERLENGTH: 32 (KMER_U64_ARRAY_SIZE: 1) Rank 0: GNU system (__GNUC__): yes Rank 0: Operating System: POSIX (OS_POSIX) Rank 0: real-time Operating System (HAVE_CLOCK_GETTIME): no Rank 0: Message-Passing Interface implementation: Open-MPI (OMPI_MPI_H) 1.4.3 Rank 0: Message-Passing Interface standard version: 2.1 Rank 0: GZIP (HAVE_LIBZ): no Rank 0: BZIP2 (HAVE_LIBBZ2): no Rank 0: GNU/Linux (__linux__): yes Rank 0: assertions (ASSERT): no Rank 0: maximum size of a message (MAXIMUM_MESSAGE_SIZE_IN_BYTES): 4000 bytes Rank 0: don't align addresses on 8 bytes (FORCE_PACKING): no Number of MPI ranks: 8 Ray master MPI rank: 0 Ray slave MPI ranks: 0-7 ------ What might be the problem? Many thanks! Best regards, CJ ------------------------------------------------------------------------------ RSA(R) Conference 2012 Save $700 by Nov 18 Register now http://p.sf.net/sfu/rsa-sfdev2dev1 _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
