On 02/11/11 05:23 PM, CJ wrote: > Hi Seb, > > Hi CJ,
> I have another question about the automatic detection of Distance& SD > in the PE reads. I have two Libraries (500bp and 2K), For the 500 bp, Ray is quite good at it. For the 2K, Ray should be fine also. > but in the > LibraryStatistics.txt file each Lib shows an AverageOuterDistance ~1K > with SD ~800. Did you provide each library ? like mpiexec -n 64 Ray -k 31 -p 500bp_1.fastq 500bp_2.fastq -p 2K_1.fastq 2K_2.fastq They both need their own channel. > Is it because of the reads or sth else? > Can you post your actual command ? > Is it better to manually set the distance? Thanks! > > Usually no, especially for such short outer distances / inserts. > Best, > CJ > Thanks. ------------------------------------------------------------------------------ RSA(R) Conference 2012 Save $700 by Nov 18 Register now http://p.sf.net/sfu/rsa-sfdev2dev1 _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users