You don't need to change it in the Makefile. [@ ray]$ make clean [@ ray]$ make MAXKMERLENGTH=64 PREFIX=ray-64 [@ ray]$ make install
[@ ray]$ ./ray-64/Ray -version Ray version 1.7.1 License: GNU General Public License MAXKMERLENGTH: 64 KMER_U64_ARRAY_SIZE: 2 MAXIMUM_MESSAGE_SIZE_IN_BYTES: 4000 bytes FORCE_PACKING = n ASSERT = n HAVE_LIBZ = n HAVE_LIBBZ2 = n CONFIG_PROFILER_COLLECT = y CONFIG_CLOCK_GETTIME = n __linux__ = y _MSC_VER = n __GNUC__ = y RAY_32_BITS = n RAY_64_BITS = y Then: mpiexec -n 16 -k 63 ./ray-64/Ray -p s_1.fastq s_2.fastq -o test-k63 On 21/11/11 06:23 AM, Rakesh Patro wrote: > Hello, > Greetings!! > > I have installed Ray assembler 1.6.1 in a Cent OS linux cluster in the > mpi environment with 10 nodes. But at the time of installation I had > by mistaken put MAKMERLENGTH =32, but now I changed the MAXKMERLENGTH > in the Makefile file in Ray-1.6.1 folder and run the command giving -s > -p inputs. After completion i checked the output and it is still > taking and compiling with 21 k-mer length even after changing -k as 64 > in the command too. Please help on urgent basis. > > -- > Thanks and Regards, > Rakesh Patro - Assoc. IT Engnr. > CMC Ltd - A TATA Enterprise > Delhi > 9716912942 > ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
