On Wed, Jan 02, 2013 at 03:26:14PM -0500, Samuel Minot wrote: > Hi Sebastien, > Thanks for your quick reply. Just to confirm, I don't need to tell Ray > whether the data is coming from a single genome (where differences in > 'coverage' may be due to repetitive regions) or multiple genome (where > they are not)?
Indeed, you don't need to because the 'Ray Meta' algorithms work locally. > Thanks, > Sam > > On Wed, Jan 2, 2013 at 3:24 PM, Sebastien Boisvert > <[email protected]> wrote: > > Hello, > > There is no additional options needed. We modified several core > parts in the algorithms to generalize them for metagenome assembly > [1]. > > --- > [1] http://genomebiology.com/2012/13/12/R122/abstract > On Wed, Jan 02, 2013 at 12:29:51PM -0500, Samuel Minot wrote: > > Dear Sebastien, > > My name is Sam Minot and I was hoping to use the new metagenomic > > implementation of Ray. I have Ray installed on an OS X system with > > OpenMPI. How do I go about running Ray in its metagenomic mode? > What > > options do I need to use? > > Sorry if I'm being dense. > > Thanks, > > Sam ------------------------------------------------------------------------------ Master Java SE, Java EE, Eclipse, Spring, Hibernate, JavaScript, jQuery and much more. Keep your Java skills current with LearnJavaNow - 200+ hours of step-by-step video tutorials by Java experts. SALE $49.99 this month only -- learn more at: http://p.sf.net/sfu/learnmore_122612 _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
