Does Ray work with fasta input files? More specifically, would it work with a "fastq" file that was really in fasta format (missing the quality value lines?) I'm asking because I'm running khmer digital normalization http://khmer.readthedocs.org/en/latest/introduction.html on an Illumina HiSeq2000 data set, and the strip-and-split-for-assembly script in the khmer package strips out quality info when it is separating paired reads from singles.
Thank you, Susan Miller ARL BioComputing ------------------------------------------------------------------------------ Get 100% visibility into Java/.NET code with AppDynamics Lite It's a free troubleshooting tool designed for production Get down to code-level detail for bottlenecks, with <2% overhead. Download for free and get started troubleshooting in minutes. http://p.sf.net/sfu/appdyn_d2d_ap2 _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
