I think the problem is Gnome can be notified (I don't know how this
actually happens, but that's not the point) or can "understand" a
compositor is enabled only if it is included in the windows manager.
xcompmgr does all of its work indirectly, so when windows have already
been created; that's probably why you don't get real transparency with
gnome-terminal, and that's probably why the logout dialog still fades,
locking the screen: in fact with a compositor-enabled wm the logout
dialog does not have any background shade (I don't understand why gksudo
worls, though).

solution? Dunno. This should be forwarded upstream. In the meantime I
found using xfwm4 is fair enough

-- 
invisible logout dialog with xcompmgr
https://bugs.launchpad.net/bugs/80343
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