Found this related bug in upstream, might be the same thing:
http://bugzilla.gnome.org/show_bug.cgi?id=514434
** Changed in: tomboy (Ubuntu)
Status: Confirmed => Triaged
** Also affects: tomboy via
http://bugzilla.gnome.org/show_bug.cgi?id=514434
Importance: Unknown
Status: Unknown
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tomboy writes to disk every 10 seconds even when idle
https://bugs.launchpad.net/bugs/222907
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