Thanks for your bug. That's know upstream:
http://bugzilla.gnome.org/show_bug.cgi?id=333670
The issue is that the buttons are not updated correctly, you can enable
or disable the programs to do what you want
** Changed in: gnome-session (Ubuntu)
Assignee: (unassigned) => Ubuntu Desktop Bugs
Status: Unconfirmed => Confirmed
** Bug watch added: GNOME Bug Tracker #333670
http://bugzilla.gnome.org/show_bug.cgi?id=333670
** Also affects: gnome-session (upstream) via
http://bugzilla.gnome.org/show_bug.cgi?id=333670
Severity: Unknown
Priority: Unknown
Status: Unknown
--
apps removed from the "startup programs" list are restored on login
https://launchpad.net/bugs/40207
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